These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGTATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTAGTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCTTCATGCTAGTTGCCACTTACCAACAACGGATACTTTGAAGGAACTATATTTCCCATGAAATTTCGAACTTGCTTCATCTAGTGTCAATCAGCAATGTTGCTAAAAAACTGGGCATCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGGCGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAACAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCCACTCGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCTTATCCACCAACGTGGTTTAAACACT] [+] EMBL CD078264 [TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGTATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTAGTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCTTCATGCTAGTTGCCACTTACCAACAACGGATACTTTGAAGGAACTATATTTCCCATGAAATTTCGAACTTGCTTCATCTAGTGTCAATCAGCAATGTTGCTAAAAAACTGGGCATCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGGCGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAACAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCCACTCGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCTTATCCACCAACGTGGTTTAAACACT] [+] EMBL CD078346 [TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGTATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTAGTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCTTCATGCTAGTTGCCACTTACCAACAACGGATACTTTGAAGGAACTATATTTCCCATGAAATTTCGAACTTGCTTCATCTAGTGTCAATCAGCAATGTTGCTAAAAAACTGGGCATCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGGCGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAACAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCCACTCGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCT ] consensusID : consensus_4928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TGAAAACTCAACTACTAATCGACTCACTGCAAAATCATGGGAAGAATGTTTACCAAAGGTTACTATAAATGATCCGGAAATTCTACGCCAAATGTCTTCTGTTCAAAAAGAAATCACTGAACAAGAAAAAGAAGATGACAAGGAGGATGTTGAAGAAAAAGTCTTTTGGACAGAAGAAAATTTCGTTCCAGGTCCAGAGCGTAAACGTGCACGTCTTGTTATGCCTGGTACAAAATCTAATCATATTGCTGTAAATGAATTATTACAATCAACAAATACAGAAGTAATATCAATCAATCAATCTGATTTAACAGCTGGTGCTCAATTAGAATTAATTAAATCTGTTACAAGTGATGATTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGCTCAAGAAAATGAAATGGAATTGGAAAAACGTT] [+] EMBL CD083803 [TGAAAACTCAACTACTAATCGACTCACTGCAAAATCATGGGAAGAATGTTTACCAAAGGTTACTATAAATGATCCGGAAATTCTACGCCAAATGTCTTCTGTTCAAAAAGAAATCACTGAACAAGAAAAAGAAGATGACAAGGAGGATGTTGAAGAAAAAGTCTTTTGGACAGAAGAAAATTTCGTTCCAGGTCCAGAGCGTAAACGTGCACGTCTTGTTATGCCTGGTACAAAATCTAATCATATTGCTGTAAATGAATTATTACAATCAACAAATACAGAAGTAATATCAATCAATCAATCTGATTTAACAGCTGGTGCTCAATTAGAATTAATTAAATCTGTTACAAGTGATGATTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGCTCAAGAAAATGAAATGGAATTGGAAAAACGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4928#0 TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCA 60 consensus_4928#1 ------------------------------------------------------------ consensus_4928#0 TCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGT 120 consensus_4928#1 ----------------------------TGAAAACTCAACTACTAATCGACTCACTGCA- 31 * * * * *** ** * * * consensus_4928#0 ATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTA 180 consensus_4928#1 AAATCATGGGAAGAATGTTTACCAAAGGTTACTATAAA----TGATCCGGAAATTCTACG 87 * * * * * *** ** * ** * * * * **** * consensus_4928#0 GTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCT 240 consensus_4928#1 CCAAATGT---CTTCTGTTCAAAAAGAAATCACTGAACAAGAAAAAGAAGATGACAAGGA 144 * * * * * **** * * * * * * * * ** * * consensus_4928#0 TCATGCTAGTTGCCA---CTTACCAACA-ACGGATACTTTGAAGGAACTATATTTCCCAT 296 consensus_4928#1 GGATGTTGAAGAAAAAGTCTTTTGGACAGAAGAAAATTTCGTTCCAGGTCCAGAGCGTA- 203 *** * * *** *** * * * * ** * * * * * * consensus_4928#0 GAAATTTCGAACTTGCTTCATCTAGTGTCAA--TCAGCAATGTTGCTAAAAAACTGGGCA 354 consensus_4928#1 AACGTGCACGTCTTGTTATGCCTGGTACAAAATCTAATCATATTGCTGTAAA-TGAATTA 262 * * **** * ** ** ** * ** ***** *** * consensus_4928#0 TCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGG 414 consensus_4928#1 TTACAATCAACAAATACAG----AAGTAATATCAATCAATCAATCTGATTTAACAGCTGG 318 * ** * * *** ** *** ** * ** * * * ** consensus_4928#0 CGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAA 474 consensus_4928#1 TGCTCAATTAGAATTAATTAAA----TCTGTTACAAGTGATGATTCACAATATAG---AT 371 * * * ** **** * * ** * * ** ** * *** * consensus_4928#0 CAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCC-ACT 533 consensus_4928#1 CAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGC 431 ******* ***** * ** * * ** * ** * * * * * consensus_4928#0 CGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCTTATC 593 consensus_4928#1 TAGCTCATCAGGCTCAAGAAAATGAAAT----GGAAT----TGGAAAAACGTT------- 476 ******** *** ** * ** * **** * * * ** * consensus_4928#0 CACCAACGTGGTTTAAACACT 614 consensus_4928#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||