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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4979 cluster # 4979       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4979#0 length = 409 sequences # 2  
consensus_4979#1 length = 94 sequences # 1  

consensusID : consensus_4979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 409
fasta sequence
                              [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGTAAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT]

[+] EMBL CD160313             [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGTAAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT]
[+] EMBL CD160324             [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAAACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTTGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAG                                                                   ]


>consensus_4979#0 AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGA ATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT TTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTAT TCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAA TTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCAC AGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGT AAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT



consensusID : consensus_4979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 94
fasta sequence
                              [GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTGTCAAGAAATTCTGTGGTAAAACGGACACG]

[+] EMBL AW626395             [GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTGTCAAGAAATTCTGTGGTAAAACGGACACG]


>consensus_4979#1 GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATA TTTTGTCAAGAAATTCTGTGGTAAAACGGACACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4979#0      AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGA 60
consensus_4979#1      ----------------------------------------------------------GA 2
                                                                                **

consensus_4979#0      ATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT 120
consensus_4979#1      ATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT 62
                      ********** ************ ************************************

consensus_4979#0      TTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTAT 180
consensus_4979#1      TTGTCAAGAAATTCTGT-----GGTAAAACGGACACG----------------------- 94
                      **   **** *******     ****  *   * **                        

consensus_4979#0      TCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAA 240
consensus_4979#1      ------------------------------------------------------------
                                                                                  

consensus_4979#0      TTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCAC 300
consensus_4979#1      ------------------------------------------------------------
                                                                                  

consensus_4979#0      AGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGT 360
consensus_4979#1      ------------------------------------------------------------
                                                                                  

consensus_4979#0      AAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT 409
consensus_4979#1      -------------------------------------------------
                                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)