These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence [ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCCAATTTACGTAAACCATATTTATCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATAAGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTACCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCCCAAGGTCAACACTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTNTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGC] [+] EMBL CD116638 [ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCCAATTTACGTAAACCATATTTATCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATAAGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTACCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCCCAAGGTCAACACTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTNTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGC] [+] EMBL CD116982 [ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCCAATTTACGTAAACCATATTTGTCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATAAGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTACCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAA ] consensusID : consensus_5025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [TAACTTCAACCATAAGCCATAGTAGAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCTAGGAGTAAAAGCCATAGAAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCTTTAACAGAAAACGCGGATACCCAAGGTCAACATTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTTTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGCTTCCTATTCTGGGCCACCAGCTACAGTAAACGACGACCTCAACAATAATTACATTGTAA] [-] EMBL CD201566 [TAACTTCAACCATAAGCCATAGTAGAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCTAGGAGTAAAAGCCATAGAAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCTTTAACAGAAAACGCGGATACCCAAGGTCAACATTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTTTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGCTTCCTATTCTGGGCCACCAGCTACAGTAAACGACGACCTCAACAATAATTACATTGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5025#0 ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCC 60 consensus_5025#1 ------------------------------------------------------------ consensus_5025#0 AATTTACGTAAACCATATTTATCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATA 120 consensus_5025#1 ------------------------------------------------------------ consensus_5025#0 AGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTA 180 consensus_5025#1 ------------------------------------------------------------ consensus_5025#0 CCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATA 240 consensus_5025#1 ----------------------------------TAACTTCAACCATAAGCCATAGTAGA 26 *********************** * consensus_5025#0 ATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACT 300 consensus_5025#1 ATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACT 86 ************************************************************ consensus_5025#0 ACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGC---------- 350 consensus_5025#1 ACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCTAGGAGTAAA 146 ************************************************** consensus_5025#0 ------------CTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCA 398 consensus_5025#1 AGCCATAGAAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCA 206 ************************************************ consensus_5025#0 GGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGA 458 consensus_5025#1 GGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGA 266 ************************************************************ consensus_5025#0 AAACTGAACATGTTTCTCTCC---------------------CCAAGGTCAACACTGACA 497 consensus_5025#1 AAACTGAACATGTTTCTCTCCTTTAACAGAAAACGCGGATACCCAAGGTCAACATTGACA 326 ********************* ************ ***** consensus_5025#0 CCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCT 557 consensus_5025#1 CCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCT 386 ************************************************************ consensus_5025#0 GAAATGGGTTNTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCC 617 consensus_5025#1 GAAATGGGTTTTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCC 446 ********** ************************************************* consensus_5025#0 TCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAAT 677 consensus_5025#1 TCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAAT 506 ************************************************************ consensus_5025#0 GACTATATGAACGGGTACGC---------------------------------------- 697 consensus_5025#1 GACTATATGAACGGGTACGCTTCCTATTCTGGGCCACCAGCTACAGTAAACGACGACCTC 566 ******************** consensus_5025#0 ------------------- consensus_5025#1 AACAATAATTACATTGTAA 585 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||