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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence
[AATAAAGTATAACAACCAATTGGCTAGACTTTAGATAGTGCCACTTGGATGTTTGCTTGATTTTCATTCGGAGATCTATTGCATTATAGCTGATGTCACTTCGTGATGCGAGGCCCAACTTTTAATTTGTCAAACTGACTCTCAACCTTAGCCGTTAGTCTTTACCCCTAAGACTTATAGCTAGTCTACTTTGAACAAGACAAGTGATTAAAGAATAATCATGATTTAAAATTTTAATTATGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACCATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATTCGAGCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCGATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTGAGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTCACAATTCATATGTTGCGTCGTCCGCTAAC-ATACANNATCGAGTGTTGTTCAACAGTCTAATGATCGTCTGGCATATACTGCTGAACGTCATCCTATTAGTTCATTCGAAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATGTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGCCTGTTCCGCTCAT]
[+] EMBL CD116211 [AATAAAGTATAACAACCAATTGGCTAGACTTTAGATAGTGCCACTTGGATGTTTGCTTGATTTTCATTCGGAGATCTATTGCATTATAGCTGATGTCACTTCGTGATGCGAGGCCCAACTTTTAATTTGTCAAACTGACTCTCAACCTTAGCCGTTAGTCTTTACCCCTAAGACTTATAGCTAGTCTACTTTGAACAAGACAAGTGATTAAAGAATAATCATGATTTAAAATTTTAATTATGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACCATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATTCGAGCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCGATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTGAGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTCACAATTCATATGTTGCGTCGTCCGCTAAC ATACANNA ]
[-] EMBL CD116174 [ tnTGACCAAGACAAGTGATTAAAGAATAATCATGATTTANAATTTTAATTATGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACCATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATCCGAGCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCGATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTGAGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTCACAATTCATATGTTGCGTCGTCCGCTAACAATACAAAATCGAGTGTTGTTCAACAGTCTAATGATCGTCTGGCATATACTGCTGAACGTCATCCTATTAGTTCATTCGAAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATGTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGCCTGTTCCGCTCAT]
consensusID : consensus_5072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[AAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATCTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGAACATTATGATTCACGTACACATAAATGGCATCTGGTAGCTCCGATGCATAAGAGACGTTGTGGCGTAGGTGTTGGAGTTGTCTATGATCTTCTGTATGCCGTTGGAGGACATGATGGACATAGTTATTTGAATTCAGTCGAAAGATATGATCCACATACAAATCAATGGTCATCAGATATTGCTTCAACTAGTACGTGTCGTACAAGTGTTGTGAGCGCNNNNATTAAATGGTTCCATGTATGCTGTTGGTGGACAAGATGGTGTGNCTTGTTTGATTTTGGTGAATGCTTTGACCCAAATGAAAAAAAGGGCTCAAGGTGCCAGTATGATTACTCGTC]
[+] EMBL CD118829 [AAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATCTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGAACATTATGATTCACGTACACATAAATGGCATCTGGTAGCTCCGATGCATAAGAGACGTTGTGGCGTAGGTGTTGGAGTTGTCTATGATCTTCTGTATGCCGTTGGAGGACATGATGGACATAGTTATTTGAATTCAGTCGAAAGATATGATCCACATACAAATCAATGGTCATCAGATATTGCTTCAACTAGTACGTGTCGTACAAGTGTTGTGAGCGCNNNNATTAAATGGTTCCATGTATGCTGTTGGTGGACAAGATGGTGTGNCTTGTTTGATTTTGGTGAATGCTTTGACCCAAATGAAAAAAAGGGCTCAAGGTGCCAGTATGATTACTCGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5072#0 AATAAAGTATAACAACCAATTGGCTAGACTTTAGATAGTGCCACTTGGATGTTTGCTTGA 60
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 TTTTCATTCGGAGATCTATTGCATTATAGCTGATGTCACTTCGTGATGCGAGGCCCAACT 120
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 TTTAATTTGTCAAACTGACTCTCAACCTTAGCCGTTAGTCTTTACCCCTAAGACTTATAG 180
consensus_5072#1 ----------------------------AAGCTATGAATCGTT-TCCGTAAAAATAAAGA 31
*** * * ** ** ** *** * * *
consensus_5072#0 CTAGTCTACTTTGAACAAGACAAGTGATTAAAGAATAATCATGATTTAAAATTTTAATTA 240
consensus_5072#1 ATTATCTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTT 91
* *** * * * **** * *** * * * ** *
consensus_5072#0 TGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACC 300
consensus_5072#1 GGCTGAACATTATGATTCACGTACACATAAATGGCATC--TGGTAGCTCCGATG-----C 144
*** ** * * ** ** *** * * * ** * *** ** *
consensus_5072#0 ATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATTCGA 360
consensus_5072#1 ATAAGAGACGTTGTGGCGTAGGTGT-TGGAGTTGTCTATGATCTTCTGTATGCCGTTGGA 203
** *** * ** * * * * ** ** ** * ** **
consensus_5072#0 GCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCG 420
consensus_5072#1 G-GACAT--GATGGACATA-GTTATTTGAATTCAGTC---GAAAGATATGATCCACATAC 256
* **** * * * **** ** ** * * *** * * ** ** * *
consensus_5072#0 ATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTG 480
consensus_5072#1 AAATCAATG---GTCATCAGATATTGCTTCAACTAGTACGTGT-CGTA-CAAGTGTTGTG 311
* ** ** ** * * * ***** * * * ** *** *** * *****
consensus_5072#0 AGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTC 540
consensus_5072#1 AGCGCNNNNATTAAATGGTTCCATGTATGCTGTTGGTGGACAAGATGGTGTGNCTTGTTT 371
** ** * ** *** ** * *** * * ** ****
consensus_5072#0 ACAATTCATATGTTGCGTCGTCCGCTAACATACANNATCGAGTGTTGTTCAACAGTCTAA 600
consensus_5072#1 G-ATTTTGGTGAATGCTTTGACCC---AAATGAAAAAAAGGGCTCAAGGTGCCAGTATGA 427
* ** *** * * ** * ** * * * * **** * *
consensus_5072#0 TGA-TCGTCTGGCATATACTGCTGAACGTCATCCTATTAGTTCATTCGAAGCTATGAATC 659
consensus_5072#1 TTACTCGTC--------------------------------------------------- 436
* * *****
consensus_5072#0 GTTTCCGTAAAAATAAAGAATTATGTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTT 719
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 ACACACATCGTGTTGTGTTGGCTGCCTGTTCCGCTCAT 757
consensus_5072#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||