These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [GTGTACTTATGCGTTTACTGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGACTGTCACTTATTGATTCATTCTATGATAATACACCCTATTGTATACATTCTTCCTTACCAAGTTTTTACCTCAGTTTTTATTTATTCTTAA] [+] EMBL CD159086 [GTGTACTTATGCGTTTACTGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGACTGTCACTTATTGATTCATTCTATGATAATACACCCTATTGTATACATTCTTCCTTACCAAGTTTTTACCTCAGTTTTTATTTATTCTTAA] consensusID : consensus_5099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 156 fasta sequence [AACAGTGCCCGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA] [+] EMBL CD198010 [AACAGTGCCCGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA] [+] EMBL CD198221 [ ATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGAGTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5099#0 GTGTACTTATGCGTTTACTGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATG 60 consensus_5099#1 ---------AACAGTGCCCGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATG 51 * * * ***************************************** consensus_5099#0 CGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTG 120 consensus_5099#1 CGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTG 111 ************************************************************ consensus_5099#0 ATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGACTGTCACTTATTGAT 180 consensus_5099#1 ATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA--------------- 156 ********************************************* consensus_5099#0 TCATTCTATGATAATACACCCTATTGTATACATTCTTCCTTACCAAGTTTTTACCTCAGT 240 consensus_5099#1 ------------------------------------------------------------ consensus_5099#0 TTTTATTTATTCTTAA 256 consensus_5099#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||