These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 472 fasta sequence [TTACCGTACCATAACAACCGCTTATTACCGTGGTGCAATGGGTTTCATATTAATGTATGATATTACCAACGAAGAATCTTTCAATGCTGTTCAGGATTGGGTAACTCAAATTAAAACCTATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATAGAGCTGTATCTGTCGATCGAGGCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTGAAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATTTGATCGTTTAGTTGATATTATATGCGATAAAATGTCTGATAACATAGATAGTAACCCAGGTGTGGTTGGTGGGACATCGAAAGGTAATCGATTGACCGATAAACCTCAACAGCAACAACAAAATCAACAAGGCCAATGTCAGTGTTAAACTCTTGCATAAGCATAGAAGAAAAAGGATAAAAGCTAGTCGCGC] [+] EMBL AI977097 [TTACCGTACCATAACAACCGCTTATTACCGTGGTGCAATGGGTTTCATATTAATGTATGATATTACCAACGAAGAATCTTTCAATGCTGTTCAGGATTGGGTAACTCAAATTAAAACCTATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATAGAGCTGTATCTGTCGATCGAGGCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTGAAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATTTGATCGTTTAGTTGATATTATATGCGATAAAATGTCTGATAACATAGATAGTAACCCAGGTGTGGTTGGTGGGACATCGAAAGGTAATCGATTGACCGATAAACCTCAACAGCAACAACAAAATCAACAAGGCCAATGTCAGTGTTAAACTCTTGCATA ] [-] EMBL CD158981 [ GATATTACCACCGAAGAATCTTTCAATGCTGTTCAGGATTGGGTACCTCAAATTAAAACCTATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATAGAGCTGTATCTGTCGATCGAGTCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTGAAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATATGATCGTTTAGTTGATATTATATGCGATAAAATGTCTGATAACATAGATAGTAACCCAGGTGTGGTTGGTGGGACATCGAAAGGTAATCGATTGACCGATAAACCTCAGCAGCAGCAACAAAATCAACAAGGCCAATGTCAGTGTTAAACTCTTGCATAAGCATAGAAGAAAAAGGATAAAAGCTAGTCGCGC] consensusID : consensus_5106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [TTCGGTTGCCATCCAGTGAAAAGCAAGCGACGCAATGAGGTCATTCTAGAGATGCAACTGACCAAAACTTCGATTACATGTTCAAACTGCTTATTATCGGCAATTCATCTGTTGGAAAAACGTCGTTCCTTTTTCGATACGCTGACGATAGCTTCACATCAGCTTTCGTTTCGACTGTCGGTATTGACTTCAAAGTAAAGACAATATTCAGACAAGACAAAAGGGTGAAACTGCAAATATGGGACACAGCTGGTCAGGAACGTTACCGTACCATAACAACCGCTTATTACCGGTGGTGGCAATGGGTTTCAAATAAATGTATGATATTACCAACGGAGAATCTTTCAATTGCTGTTCAGGAGTGGGGAACCCAAAT] [+] EMBL BE431250 [TTCGGTTGCCATCCAGTGAAAAGCAAGCGACGCAATGAGGTCATTCTAGAGATGCAACTGACCAAAACTTCGATTACATGTTCAAACTGCTTATTATCGGCAATTCATCTGTTGGAAAAACGTCGTTCCTTTTTCGATACGCTGACGATAGCTTCACATCAGCTTTCGTTTCGACTGTCGGTATTGACTTCAAAGTAAAGACAATATTCAGACAAGACAAAAGGGTGAAACTGCAAATATGGGACACAGCTGGTCAGGAACGTTACCGTACCATAACAACCGCTTATTACCGGTGGTGGCAATGGGTTTCAAATAAATGTATGATATTACCAACGGAGAATCTTTCAATTGCTGTTCAGGAGTGGGGAACCCAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5106#0 TTACCGTACCATAACAACCGCTTATTACCGTGGTGCAATGGGTTTCATATTAATGTATGA 60 consensus_5106#1 ------------------------------------------------------------ consensus_5106#0 TATTACCAACGAAGAATCTTTCAATGCTGTTCAGGATTGGGTAACTCAAATTA-AAACCT 119 consensus_5106#1 ------------------TTCGGTTGCCATCCAGTGAAAAGCAAGCGACGCAATGAGGTC 42 ** *** * *** * ** * * * consensus_5106#0 ATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATA 179 consensus_5106#1 ATTCTAGAGATGCAAC-TGACCAAAACTT--CGATTACATGTTCAAACTGCTTATTATCG 99 **** * *** * * *** * * * * * * ** * * consensus_5106#0 GAGCTGTATCTGTCGATCGAGGCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTG 239 consensus_5106#1 GCAATTCATCTGTTGG--AAAAACGTCGTTC--CTTTTTCGATACGCTGACGATAGCTTC 155 * * ****** * * * * ** ** * * * *** ** ** consensus_5106#0 AAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATTTGATCGTTTAGTTGATATT- 298 consensus_5106#1 A--CATCAGCTTTCG----TTTCGACTGTCGGTATTGACTTCAAAGTAAAGACAATATTC 209 * * ***** * * * ** * ** * ** * ** ** ***** consensus_5106#0 ATATGCGATAAAATGTCTGATAACATAGATA-GTAACCCAGGTGTGGTTGGTGGGACATC 357 consensus_5106#1 AGACAAGACAAAA-GGGTGAAACTGCAAATATGGGACACAGCTG-GTCAGGAACGTTACC 267 * * ** **** * *** * * *** * ** *** ** * ** * * * consensus_5106#0 GAAAGGTAATCGATTGACCGATAAACCTCAACAGCAACAA---CAAAATCAACA-AGGCC 413 consensus_5106#1 GTACCATAA-CAACCG-CTTATTACCGGTGGTGGCAATGGGTTTCAAATAAATGTATGAT 325 * * *** * * * * ** * * **** **** ** * * consensus_5106#0 AATGTCAGTGTTAAACTCTTGCATAAGCATAGAAGAAAAAGGATAAAAGCTAGTCGCGC 472 consensus_5106#1 ATTACCAACGGAGAATCTTTCAATTGCTGTTCAGGAGTGGGGAACCCAAAT-------- 376 * * ** * ** ** ** * * ** *** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||