These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [GAGGGCCAGNAATTCGGCACGAGGGTTTTTTTTTATTGAAAATATTTTAGAGACTTGGGAGTTACAGATTTAAGAGTTGATTTAGATCAGTTTTATCAAATTCACGTTGATACAGAACTAATGCGATCTCATGAAGTTTTATTTCAGCCAAGTTTTATGGGTAGTTCAGAAGCTGGTCTCTCCGACTGTTTAGAGTTTGTACTGCGAGATACATCTCGTCTACTTGATAGTTCATCTGAGCCAAACTTTCCTCAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGGTGGACCAAAATGGGATAATATTGAAGTTATTGGAGCCGGTAATCCTCATTTGGATGCATGGCATGGAGCTTGTCATTCCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACACATGTTGAGAGATTCCGGCCATATTATTTAAAGATCATTCTTTAAGGGATACGGTATTGGGTCAATACCACCTGAAATATTTTACACTGAAAAACGCATTGTTCCCTGTAGATTATAATAGGGTGCCACCTAACGGGTCTTTTGGGGGTTCTATTTTAAAAGGATTAATTTTCAAAAGCCCCCCTTTCCCTTTGAAAATTTTTGGGTTTTTAAATAAAAAGTTCATAAAATAAATCCCACCGCATTTTTCTTCCCGGGGTTTTTCCACCCCCTTTAATTAAAAAAAA] [+] EMBL CD081508 [GAGGGCCAGNAATTCGGCACGAGGGTTTTTTTTTATTGAAAATATTTTAGAGACTTGGGAGTTACAGATTTAAGAGTTGATTTAGATCAGTTTTATCAAATTCACGTTGATACAGAACTAATGCGATCTCATGAAGTTTTATTTCAGCCAAGTTTTATGGGTAGTTCAGAAGCTGGTCTCTCCGACTGTTTAGAGTTTGTACTGCGAGATACATCTCGTCTACTTGATAGTTCATCTGAGCCAAACTTTCCTCAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGGTGGACCAAAATGGGATAATATTGAAGTTATTGGAGCCGGTAATCCTCATTTGGATGCATGGCATGGAGCTTGTCATTCCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACACATGTTGAGAGATTCCGGCCATATTATTTAAAGATCATTCTTTAAGGGATACGGTATTGGGTCAATACCACCTGAAATATTTTACACTGAAAAACGCATTGTTCCCTGTAGATTATAATAGGGTGCCACCTAACGGGTCTTTTGGGGGTTCTATTTTAAAAGGATTAATTTTCAAAAGCCCCCCTTTCCCTTTGAAAATTTTTGGGTTTTTAAATAAAAAGTTCATAAAATAAATCCCACCGCATTTTTCTTCCCGGGGTTTTTCCACCCCCTTTAATTAAAAAAAA] consensusID : consensus_5136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence [AGTTCATCTGAGCCAAACTTTCCTCAAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGTTGGACCAAAATGGGATAATATTGAAGTTATTGTAGCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCATATTATTTTAAAGATCATCCTTTAGGTAATCGTTATTGGATCAATACAAACTGAAGTATTTAACATTGAAAACCGATTGATTCCTTGTAGAT--AATATCAGTGTACCACTAACTGTATTCTTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGAATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTTTCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATCTTTGTTTNTATACTGTTTANGTGGAAGAAAAAAAAAAAAAAAAA] [-] EMBL CD075332 [AGTTCATCTGAGCCAAACTTTCCTCAAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGTTGGACCAAAATGGGATAATATTGAAGTTATTGTAGCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCATATTATTTTAAAGATCATCCTTTAGGTAATCGTTATTGGATCAATACAAACTGAAGTATTTAACATTGAAAACCGATTGATTCCTTGTAGAT AATATCAGTGTACCACTAACTGTATTCTTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGAATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTTTCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATC ] [-] EMBL AI395651 [ tTACCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCATATTATTTTAAAGATCATCCTTTAGGTAATCGTTATTGGATCAATACAAACTGAAGTATTTAACATTGAAAACCGATTGATTCCTTGTAGATAAAATATCAGTGTACCACTAACTGTATTCTTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGAATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTTTCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATCTTTGTTTNTATACTGTTTANGTGGAAGAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5136#0 GAGGGCCAGNAATTCGGCACGAGGGTTTTTTTTTATTGAAAATATTTTAGAGACTTGGGA 60 consensus_5136#1 ------------------------------------------------------------ consensus_5136#0 GTTACAGATTTAAGAGTTGATTTAGATCAGTTTTATCAAATTCACGTTGATACAGAACTA 120 consensus_5136#1 ------------------------------------------------------------ consensus_5136#0 ATGCGATCTCATGAAGTTTTATTTCAGCCAAGTTTTATGGGTAGTTCAGAAGCTGGTCTC 180 consensus_5136#1 ------------------------------------------------------------ consensus_5136#0 TCCGACTGTTTAGAGTTTGTACTGCGAGATACATCTCGTCTACTTGATAGTTCATCTGAG 240 consensus_5136#1 ------------------------------------------------AGTTCATCTGAG 12 ************ consensus_5136#0 CCAAACTTTCCTCAA-GAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTC 299 consensus_5136#1 CCAAACTTTCCTCAAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTC 72 *************** ******************************************** consensus_5136#0 GACCGAATTCGATGCGATATCAGGCCTTTATTACCTGGTGGACCAAAATGGGATAATATT 359 consensus_5136#1 GACCGAATTCGATGCGATATCAGGCCTTTATTACCTGTTGGACCAAAATGGGATAATATT 132 ************************************* ********************** consensus_5136#0 GAAGTTATTGGAGCCGGTAATCCTCATTTGGATGCATGGCATGGAGCTTGTCATTCCGCG 419 consensus_5136#1 GAAGTTATTGTAGCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCG 192 ********** ***** ******************************* ****** **** consensus_5136#0 AACTCATCATATGCTGAACAGTACTACACAACTAAACACATGT-TGAGAGATTCCGGCCA 478 consensus_5136#1 AACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCA 252 ************************************** **** *** ** * * *** consensus_5136#0 TATTATTT-AAAGATCATTCTTTAAGGGATACGGTATTGGGTCAATACCACCTGAAATAT 537 consensus_5136#1 TATTATTTTAAAGATCATCCTTTAGGTAAT-CGTTATTGGATCAATACAAACTGAAGTAT 311 ******** ********* ***** * ** ** ****** ******* * ***** *** consensus_5136#0 TTTACACTGAAAAACGCATTGTTCCCTGTAGATTATAATAGGGTGCCACCTAACGGGTCT 597 consensus_5136#1 TTAACATTGAAAACCGATTGATTCCTTGTAGATAATATCAGTGTACCACTAACTGTATTC 371 ** *** ****** ** * **** ******* *** ** ** **** * * * consensus_5136#0 TTTGGGGGTTC--TATTTTAAAAG-GATTAATTTTCAA-AAGCCCCCCTTTCCC-TTTGA 652 consensus_5136#1 TTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGA 431 **** * *** *** ***** * ************ **** ** ** **** ***** consensus_5136#0 A-AATTTTTGGGTTTT----TAAATAAAAAGTTCATAAA-ATAAATCCCACCGCATTTTT 706 consensus_5136#1 ATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTT 491 * ***** ** ** * ** * * ** ****** * **** *** * ********* consensus_5136#0 CT--TCCCGGGGTTTTTCCAC---CCCCTTTAATTAAAAAAAA----------------- 744 consensus_5136#1 TCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATCTTTGTTTNTATAC 551 * ** *** *** *** * * ************ ** consensus_5136#0 ------------------------------- consensus_5136#1 TGTTTANGTGGAAGAAAAAAAAAAAAAAAAA 582 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||