These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [GGACGACACTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATATAAGAGAGCTTCGTGAAGAATTTGAAGATTATCCTGAACTGTATGGTATACGTAGATCTGCACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCACTTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAGATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACACGAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGACGAATCTAACGATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCATATGGCACTGTACCAATACTAAATCAACAAACGTGTTTTCAAAAGCCAAGAGGTCCTTTGGTCCGAAAACCTTATGCACCAGTCTTGGCAAGCAGAAATTCGAAGTCATTCATAAAATCAGATGACAATAATGTAGACCAAATTGGC] [-] EMBL CD088976 [GGACGACACTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATATAAGAGAGCTTCGTGAAGAATTTGAAGATTATCCTGAACTGTATGGTATACGTAGATCTGCACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCACTTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAGATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACACGAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGACGAATCTAACGATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCATATGGCACTGTACCAATACT ] [+] EMBL CD112878 [ CTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATATAAGAGAGCTTCGTGAAGAATTAGAAGATTATCCTGAACTGTATGGTATACGTAGATCTGCACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCACTTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAGATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACACGAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGATGAATCTAACGATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCATATGGCACTGTACCAATACTAAATCAACAAACGTGTTTTCAAAAGCCAAGAGGTCCTTTGGTCCGAAAACCTTATGCACCAGTCTTGGCAAGCAGAAATTCGAAGTCATTCATAAAATCAGATGACAATAATGTAGACCAAATTGGC] consensusID : consensus_5151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [CGGTTAACTTCACCACTTACACCATCTTCATCCTCTTCTGAATATTGTTCTTTTACGCCAATTTGGTCTACATTATTGTCATCTGATTTTATGAATGACTTCGAATTTCTAAAACGGTAAAAAGGGGGAAAACAAAACAATTTTAAGATGACGAAAATTACCAGTTTAATAAAAAAAAAACGAAATACTATTTATCCAAACCACTTACAGAATGACTGTAGCTAAATAACCAATAAAAACTTGGAGGTACCAGGACAGCTGTTTCGCCCTAGCATATGATTTTTCATCA] [+] EMBL CD085635 [CGGTTAACTTCACCACTTACACCATCTTCATCCTCTTCTGAATATTGTTCTTTTACGCCAATTTGGTCTACATTATTGTCATCTGATTTTATGAATGACTTCGAATTTCTAAAACGGTAAAAAGGGGGAAAACAAAACAATTTTAAGATGACGAAAATTACCAGTTTAATAAAAAAAAAACGAAATACTATTTATCCAAACCACTTACAGAATGACTGTAGCTAAATAACCAATAAAAACTTGGAGGTACCAGGACAGCTGTTTCGCCCTAGCATATGATTTTTCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5151#0 GGACGACACTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATAT 60 consensus_5151#1 -----------------------------------CGGTTAACTTCACCACTTACACCAT 25 * ** * * * * * * ** consensus_5151#0 AAGAGAGCTTCGTGAAGAATTTGAAGATTATCCTGAACTGTATGGTATACGTAGATCT-G 119 consensus_5151#1 CTTCATCCTCTTCTGAATATT----GTTCTTTTACGCCAATTTGGTCTACATTATTGTCA 81 ** * *** * * * * * **** *** * * * consensus_5151#0 CACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCAC 179 consensus_5151#1 TCTGATTTTATGAATGACTTCGAATTTCTAAAACGGTAAAAAGGGGGAAAACAAA---AC 138 ** * ** * * ** *** * * * * * * *** * ** consensus_5151#0 TTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAG 239 consensus_5151#1 AATTTTAAGATGACGAAAATTACCAGTTTAATA-------AAAAAAAAACGAAATACTAT 191 *** *** * ** * * *** ** * * * ** * ** * consensus_5151#0 ATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACAC 299 consensus_5151#1 TTATCCAAACC-ACTTACAGAATGAC--TGTAGCTAAATAAC------CAATAAAAACTT 242 ** **** ** ****** * ** * * * ** * *** *** consensus_5151#0 GAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGACGAATCTAACG 359 consensus_5151#1 GGAGGTACCAGGACAGCTGT---TTCGCCCTAGCATATGAT--TTTTCATCA-------- 289 * * * * * ** * ** * * * **** **** * * consensus_5151#0 ATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCAT 419 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 ATGGCACTGTACCAATACTAAATCAACAAACGTGTTTTCAAAAGCCAAGAGGTCCTTTGG 479 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 TCCGAAAACCTTATGCACCAGTCTTGGCAAGCAGAAATTCGAAGTCATTCATAAAATCAG 539 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 ATGACAATAATGTAGACCAAATTGGC 565 consensus_5151#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||