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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[GAGACTTACAATTACAAATATACATTTTCTGTGGAAATTGCACCAGTTTGTAAGACTGACATAGTTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTTGTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTATGTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTTTCACCATTTGTTGTACTTGAAATTGAAGAACAAAGAGATGATTCTAGCCAAATGAATTCTTCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAAAAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTNTACGCCCCAGCCAGTCGAAGAATACACCTGNGGATAAAAACAAATGGACCAAGCAACGTAAACGCATTCGAAAAAATTCATTGAAATGTACAGATTCTGAATGTGATACTTCTACCCNAGTAGTGCATGNCAACTTCTCATCATCAGAAGATGAGTATGTGTCATTCAGCGAGGATGACGAGGGATAACAGNTGAATNTTTCGATATGATACTATTNTGATGAACTCATGAGAACATCATTAATNACATAGTTCATGGACGTACACATATGAGCTTTANAGTGGGGATCATAACACTGTGATGATTTGATTTTCGATTATCACGTATTCTATATAATAA]
[+] EMBL CD082214 [GAGACTTACAATTACAAATATACATTTTCTGTGGAAATTGCACCAGTTTGTAAGACTGACATAGTTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTTGTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTATGTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTTTCACCATTTGTTGTACTTGAAATTGAAGAACAAAGAGATGATTCTAGCCAAATGAATTCTTCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAAAAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTNTACGCCCCAGCCAGTCGAAGAATACACCTGNGGATAAAAACAAATGGACCAAGCAACGTAAACGCATTCGAAAAAATTCATTGAAATGTACAGATTCTGAATGTGATACTTCTACCCNAGTAGTGCATGNCAACTTCTCATCATCAGAAGATGAGTATGTGTCATTCAGCGAGGATGACGAGGGATAACAGNTGAATNTTTCGATATGATACTATTNTGATGAACTCATGAGAACATCATTAATNACATAGTTCATGGACGTACACATATGAGCTTTANAGTGGGGATCATAACACTGTGATGATTTGATTTTCGATTATCACGTATTCTATATAATAA]
[+] EMBL CD079155 [ TTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTTGTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTATGTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTTTCACCATTTGTTGTACTTGAAATTGAAG ATAAAGAGATGATTCTAGCCAAATGAATTCTTCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAAAAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTCTACGCCCCAGCCAGTCGAAGAA ]
consensusID : consensus_5187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[TGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTTTACGCCCCAGCCAGTCGAAGAATACACCTGGGGATAAAAACAATGGACCAAGCAAACGTAAACGCATTCGAAAAAATTCATTGAATGTAACAGATTCTGAATGTGATACTTCTACCCAGGTAGTGCATGCAAACTTCTCATCATCAGAGGATGAGTATGTGTCATTCAGCGAGGATGACGAGGATAAAACAGTTGAATTTTTCGATATGGATACTAATTTTGATGAACTCAATGAAGAAACATCATTAAATTAACCATAGTTTCATGGAACGTAACACAATAATGAAGCTCTCAGAGGTGGTGTATTCATAATCAACTGTTGTATTGATTTTGATTTTTATCGATATTATTTACGGATAATTTCTCATAAATAAATAAATACTCT]
[-] EMBL CD075826 [TGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTTTACGCCCCAGCCAGTCGAAGAATACACCTGGGGATAAAAACAATGGACCAAGCAAACGTAAACGCATTCGAAAAAATTCATTGAATGTAACAGATTCTGAATGTGATACTTCTACCCAGGTAGTGCATGCAAACTTCTCATCATCAGAGGATGAGTATGTGTCATTCAGCGAGGATGACGAGGATAAAACAGTTGAATTTTTCGATATGGATACTAATTTTGATGAACTCAATGAAGAAACATCATTAAATTAACCATAGTTTCATGGAACGTAACACAATAATGAAGCTCTCAGAGGTGGTGTATTCATAATCAACTGTTGTATTGATTTTGATTTTTATCGATATTATTTACGGATAATTTCTCATAAATAAATAAATACTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5187#0 GAGACTTACAATTACAAATATACATTTTCTGTGGAAATTGCACCAGTTTGTAAGACTGAC 60
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 ATAGTTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTT 120
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 GTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTAT 180
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 GTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTT 240
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 TCACCATTTGTTGTACTTGAAATTGAAGAACAAAGAGATGATTCTAGCCAAATGAATTCT 300
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 TCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAA 360
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 AAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTT 420
consensus_5187#1 ----------------------------TGAAAGATCCATCTAACGAGACAGGTTTAGTT 32
********************************
consensus_5187#0 CAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATT 480
consensus_5187#1 CAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATT 92
************************************************************
consensus_5187#0 TTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACA 540
consensus_5187#1 TTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACA 152
************************************************************
consensus_5187#0 GAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTNTACGCCCCAGC 600
consensus_5187#1 GAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTTTACGCCCCAGC 212
************************************************ ***********
consensus_5187#0 CAGTCGAAGAATACACCTGNGGATAAAAACAAATGGACCAAGCAA-CGTAAACGCATTCG 659
consensus_5187#1 CAGTCGAAGAATACACCTGGGGATAAAAACAA-TGGACCAAGCAAACGTAAACGCATTCG 271
******************* ************ ************ **************
consensus_5187#0 AAAAAATTCATTGAAATGTACAGATTCTGAATGTGATACTTCTACCCNAGTAGTGCATGN 719
consensus_5187#1 AAAAAATTCATTGAATGTAACAGATTCTGAATGTGATACTTCTACCCAGGTAGTGCATGC 331
*************** **************************** **********
consensus_5187#0 CAACTTCTCATCATCAGAAGATGAGTATGTGTCATTCAGCGAGGATGACGAGGG-ATAAC 778
consensus_5187#1 AAACTTCTCATCATCAGAGGATGAGTATGTGTCATTCAGCGAGGATGACGAGGATAAAAC 391
***************** ********************************** * ***
consensus_5187#0 AGNTGAATNTTTCGATATG-ATACTA-TTNTGATGAACTCA-TGAG--AACATCATTAA- 832
consensus_5187#1 AGTTGAATTTTTCGATATGGATACTAATTTTGATGAACTCAATGAAGAAACATCATTAAA 451
** ***** ********** ****** ** *********** *** ***********
consensus_5187#0 TNA--CATAGTT-CATGGA-CGTA-CACAT--ATGAGCTTTANAGTGGGGAT-----CAT 880
consensus_5187#1 TTAACCATAGTTTCATGGAACGTAACACAATAATGAAGCTCTCAGAGGTGGTGTATTCAT 511
* * ******* ****** **** **** **** * ** ** * * ***
consensus_5187#0 AACACTGTGATGATTTGATTTTCGATTATCACGTATTCTATATAATAA------------ 928
consensus_5187#1 AATCAACTGTTGTATTGATTTT-GATTTTTATCGATATTATTTACGGATAATTTCTCATA 570
** ** ** ******** **** * * ** *** ** *
consensus_5187#0 ----------------
consensus_5187#1 AATAAATAAATACTCT 586
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||