These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence [CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAAAGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTACCTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGTTGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCATAATAATAAAATACAATTTCATATT] [+] EMBL CD084346 [CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATT ] [-] EMBL CD075343 [ CTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAAAGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTACCTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGTTGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCATAATAATAAAATACAATTTCATATT] consensusID : consensus_5196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGGTCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTTGGGCAAACAAAATGCCCAATCAACATATCCCCCAAATGTTTGGTTAATTGGGAAGCCCCTTCTCCCTTTTCCCTCCCCGAAGGGGTCTTTTGAAAATAATTCAAGAAATTTTTACCCATTGCTATGGCTGGCCCAAATTTTTTATTGATAAGGGGTCCAGAAACGCGCCCAACACCTTATCCCCATTTGTGGGCCATTTTTTTTTAAAGGCTTGTTTTTCACCTTTTTAAACCGGGCAAAAAATTTGTTTTCACCTTTTGTTCTTAAAAGGCTTCCTTTCACCAAACAAAAATTTCCTTTTTTTTTGTTATTTAGAGAACCCCCTTTTGGGGAAAAGCTTAATTTTGTACCAAAAAAAACAATCGGGGAGTGTGAAAAAAAAACATCTCGGCCGGAAAAATTAACGGCGGGGT] [+] EMBL CD081520 [CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGGTCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTTGGGCAAACAAAATGCCCAATCAACATATCCCCCAAATGTTTGGTTAATTGGGAAGCCCCTTCTCCCTTTTCCCTCCCCGAAGGGGTCTTTTGAAAATAATTCAAGAAATTTTTACCCATTGCTATGGCTGGCCCAAATTTTTTATTGATAAGGGGTCCAGAAACGCGCCCAACACCTTATCCCCATTTGTGGGCCATTTTTTTTTAAAGGCTTGTTTTTCACCTTTTTAAACCGGGCAAAAAATTTGTTTTCACCTTTTGTTCTTAAAAGGCTTCCTTTCACCAAACAAAAATTTCCTTTTTTTTTGTTATTTAGAGAACCCCCTTTTGGGGAAAAGCTTAATTTTGTACCAAAAAAAACAATCGGGGAGTGTGAAAAAAAAACATCTCGGCCGGAAAAATTAACGGCGGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5196#0 ------------------------------------------------------------ consensus_5196#1 CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGG 60 consensus_5196#0 -----------------------CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGT 37 consensus_5196#1 TCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGT 120 *** *** * ********************** consensus_5196#0 TTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAAC 97 consensus_5196#1 TTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAAC 180 ************************************************************ consensus_5196#0 TGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCA 157 consensus_5196#1 TGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCA 240 ************************************************************ consensus_5196#0 TCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGC 217 consensus_5196#1 TCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGC 300 ************************************************************ consensus_5196#0 TTGTATAAATAATGATAAAAAGAATTTAT-CATCTCCATTTATAGCACGCTACGTCAATT 276 consensus_5196#1 TTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTT 360 ***************************** ******** ************ * ** ** consensus_5196#0 GGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAG 336 consensus_5196#1 GGG-CAAACAAAAT-GCCCAA-TCAACATATCCCCCAAA-TGTTTGGTTAATTGGGAAGC 416 *** *** ****** *** ** ******** * * ** ****** ******* ** consensus_5196#0 CTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATT 396 consensus_5196#1 CCCTTCTCCCTTTT---CCCTCCCCGAAGGGGTCTTTTGAAAATAA--TTCAAGAAATTT 471 * * *** ** *** ** ** * * ** ** **** ****** ********* ** consensus_5196#0 TTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAA 456 consensus_5196#1 TT--ACCCATTGC-TATGGCTGGCCCAAATTTTTTATTG---ATAAGGGGTCCA--GAAA 523 ** *** ***** **** *** * *** ** *** **** * ** **** consensus_5196#0 TGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTT 516 consensus_5196#1 CGCGCCCAACACCTT---ATCCCCATTT--GTGGGCCATTTTTTTTTAAA--GGCTTGTT 576 ** *** ** **** **** ** ****** ** ** * * ***** consensus_5196#0 CTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAA 576 consensus_5196#1 TT--TCACC-TTTTTAA-ACCGGGCAAAAAATTTGTTTTCACCT---TTTGTTCTTAAAA 629 * * * * ***** ** * * *** **** * ** * * ********** ** consensus_5196#0 AGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTAC 636 consensus_5196#1 GGCTT--CCTTTCACCAAA--CAAAAATTT--CCTTTTTTTTTGTT-ATTTAGAGA--AC 680 * * * ** ** * * **** ** * * *** ** ***** ** * ** ** consensus_5196#0 CTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGT 696 consensus_5196#1 CCCCTTTTGGGGAAAA--GCTTAATTTT-GTACCAAAAA--AAACAATCGGGGAGTGT-- 733 * ******* *** ** ******* *** * ** * ** * ** * * consensus_5196#0 TGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCAT 756 consensus_5196#1 -GAAAAAAAAACATCTCGGCCGGAAAAATTAACGGC-GGGGT------------------ 773 ***** ** * * * * * * * ** ** consensus_5196#0 AATAATAAAATACAATTTCATATT 780 consensus_5196#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||