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Schistosoma mansoni
cluster # 5196 cluster # 5196       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5196#0 length = 780 sequences # 2  
consensus_5196#1 length = 773 sequences # 1  

consensusID : consensus_5196#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 780
fasta sequence
                              [CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAAAGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTACCTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGTTGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCATAATAATAAAATACAATTTCATATT]

[+] EMBL CD084346             [CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATT                                                                                                                                                                                                                                       ]
[-] EMBL CD075343             [                                                                                                                                                                                                                  CTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAAAGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTACCTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGTTGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCATAATAATAAAATACAATTTCATATT]


>consensus_5196#0 CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATA TGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATAC TTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTA CTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGA ATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTC AACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCAC GAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTA CAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAA ATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAG TCAAAGATTTATGTTAATCAGTATTTGTTCTTATAAAGTTCTATCATTTACAAGAGTCAA ATATATCGCTTTTATTCTTGTTTATCTGATGATTACCTTATTTTGGGCAAATTTGCATAA TTTTTGTAACTAAGATGAATCGTATAGGTGATATGTTGAAAAGTTAATACATTTACTGTA CAGTTAAATATTTAACGTTATGTATATACCTATCATAATAATAAAATACAATTTCATATT



consensusID : consensus_5196#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 773
fasta sequence
                              [CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGGTCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTTGGGCAAACAAAATGCCCAATCAACATATCCCCCAAATGTTTGGTTAATTGGGAAGCCCCTTCTCCCTTTTCCCTCCCCGAAGGGGTCTTTTGAAAATAATTCAAGAAATTTTTACCCATTGCTATGGCTGGCCCAAATTTTTTATTGATAAGGGGTCCAGAAACGCGCCCAACACCTTATCCCCATTTGTGGGCCATTTTTTTTTAAAGGCTTGTTTTTCACCTTTTTAAACCGGGCAAAAAATTTGTTTTCACCTTTTGTTCTTAAAAGGCTTCCTTTCACCAAACAAAAATTTCCTTTTTTTTTGTTATTTAGAGAACCCCCTTTTGGGGAAAAGCTTAATTTTGTACCAAAAAAAACAATCGGGGAGTGTGAAAAAAAAACATCTCGGCCGGAAAAATTAACGGCGGGGT]

[+] EMBL CD081520             [CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGGTCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTTGGGCAAACAAAATGCCCAATCAACATATCCCCCAAATGTTTGGTTAATTGGGAAGCCCCTTCTCCCTTTTCCCTCCCCGAAGGGGTCTTTTGAAAATAATTCAAGAAATTTTTACCCATTGCTATGGCTGGCCCAAATTTTTTATTGATAAGGGGTCCAGAAACGCGCCCAACACCTTATCCCCATTTGTGGGCCATTTTTTTTTAAAGGCTTGTTTTTCACCTTTTTAAACCGGGCAAAAAATTTGTTTTCACCTTTTGTTCTTAAAAGGCTTCCTTTCACCAAACAAAAATTTCCTTTTTTTTTGTTATTTAGAGAACCCCCTTTTGGGGAAAAGCTTAATTTTGTACCAAAAAAAACAATCGGGGAGTGTGAAAAAAAAACATCTCGGCCGGAAAAATTAACGGCGGGGT]


>consensus_5196#1 CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGG TCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGT TTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAAC TGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCA TCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGC TTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTT GGGCAAACAAAATGCCCAATCAACATATCCCCCAAATGTTTGGTTAATTGGGAAGCCCCT TCTCCCTTTTCCCTCCCCGAAGGGGTCTTTTGAAAATAATTCAAGAAATTTTTACCCATT GCTATGGCTGGCCCAAATTTTTTATTGATAAGGGGTCCAGAAACGCGCCCAACACCTTAT CCCCATTTGTGGGCCATTTTTTTTTAAAGGCTTGTTTTTCACCTTTTTAAACCGGGCAAA AAATTTGTTTTCACCTTTTGTTCTTAAAAGGCTTCCTTTCACCAAACAAAAATTTCCTTT TTTTTTGTTATTTAGAGAACCCCCTTTTGGGGAAAAGCTTAATTTTGTACCAAAAAAAAC AATCGGGGAGTGTGAAAAAAAAACATCTCGGCCGGAAAAATTAACGGCGGGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5196#0      ------------------------------------------------------------
consensus_5196#1      CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGG 60
                                                                                  

consensus_5196#0      -----------------------CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGT 37
consensus_5196#1      TCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGT 120
                                               *** ***   *  **********************

consensus_5196#0      TTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAAC 97
consensus_5196#1      TTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAAC 180
                      ************************************************************

consensus_5196#0      TGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCA 157
consensus_5196#1      TGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCA 240
                      ************************************************************

consensus_5196#0      TCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGC 217
consensus_5196#1      TCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGC 300
                      ************************************************************

consensus_5196#0      TTGTATAAATAATGATAAAAAGAATTTAT-CATCTCCATTTATAGCACGCTACGTCAATT 276
consensus_5196#1      TTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTT 360
                      ***************************** ******** ************ *  ** **

consensus_5196#0      GGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAG 336
consensus_5196#1      GGG-CAAACAAAAT-GCCCAA-TCAACATATCCCCCAAA-TGTTTGGTTAATTGGGAAGC 416
                      *** *** ****** *** ** ********  *  * ** ******  ******* **  

consensus_5196#0      CTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATT 396
consensus_5196#1      CCCTTCTCCCTTTT---CCCTCCCCGAAGGGGTCTTTTGAAAATAA--TTCAAGAAATTT 471
                      * * *** ** ***   ** ** *  * ** **  **** ******  ********* **

consensus_5196#0      TTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAA 456
consensus_5196#1      TT--ACCCATTGC-TATGGCTGGCCCAAATTTTTTATTG---ATAAGGGGTCCA--GAAA 523
                      **  *** ***** **** ***  *  *** ** ***     **** *    **  ****

consensus_5196#0      TGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTT 516
consensus_5196#1      CGCGCCCAACACCTT---ATCCCCATTT--GTGGGCCATTTTTTTTTAAA--GGCTTGTT 576
                       **   *** **      ****  ****   **   ****** ** ** *  *  *****

consensus_5196#0      CTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAA 576
consensus_5196#1      TT--TCACC-TTTTTAA-ACCGGGCAAAAAATTTGTTTTCACCT---TTTGTTCTTAAAA 629
                       *    * * * ***** ** * *  *** **** * ** * *    ********** **

consensus_5196#0      AGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTAC 636
consensus_5196#1      GGCTT--CCTTTCACCAAA--CAAAAATTT--CCTTTTTTTTTGTT-ATTTAGAGA--AC 680
                       * *    * ** ** * *  **** ** *  * *** ** ***** ** *   **  **

consensus_5196#0      CTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGT 696
consensus_5196#1      CCCCTTTTGGGGAAAA--GCTTAATTTT-GTACCAAAAA--AAACAATCGGGGAGTGT-- 733
                      *   ******* ***   ** ******* *** * ** *  ** *     **   * *  

consensus_5196#0      TGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCAT 756
consensus_5196#1      -GAAAAAAAAACATCTCGGCCGGAAAAATTAACGGC-GGGGT------------------ 773
                       *****   ** *  *   * * * *  * **        **                  

consensus_5196#0      AATAATAAAATACAATTTCATATT 780
consensus_5196#1      ------------------------
                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)