These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 554 fasta sequence [TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAACAGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATACTTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTTAGGAACAATAAGTCTAGTGTGTGAGTTGAAGAATTATTCTGTATAACCCTGACAAAATGGGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGCAGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACTGTTTAACACTAAGAAACAAAGTATGANTAAGT] [+] EMBL CD114846 [TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAACAGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATACTTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTTAGGAACAATAAGTCTAGTGTGTGAGTTGAAGAATTATTCTGTATAACCCTGACAAAATGGGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGCAGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACTGTTTAACACTAAGAAACAAAGTATGANTAAGT] [+] EMBL CD114955 [TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAACAGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATACTTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTTAGGAACAATAAGTCTAGTGTGTGAGTTGAAGAATTATTCTGTATAACCCTGACAAAATGAGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGCAGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACT ] consensusID : consensus_5217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [TCAAACCTGGCAAATATATTATTTGACTAGAAGTTATTGAATGCAATGGAAGTAAACGATGAAGGAATGATTGCTTATATACGTTATATTCATTGTCTTCAGATTTTATTAATGTTTTATTAGCACTCTGTCCATGAAAATAACGATAAAGAGCTTCGATAAGAAGTTTAGCCAGTTTTACATCAGTTAGAAGAGGTACGTTTGTGTCAACGGCAAGACGTCTAGTTTGATAGCCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAGAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCC] [+] EMBL CD154406 [TCAAACCTGGCAAATATATTATTTGACTAGAAGTTATTGAATGCAATGGAAGTAAACGATGAAGGAATGATTGCTTATATACGTTATATTCATTGTCTTCAGATTTTATTAATGTTTTATTAGCACTCTGTCCATGAAAATAACGATAAAGAGCTTCGATAAGAAGTTTAGCCAGTTTTACATCAGTTAGAAGAGGTACGTTTGTGTCAACGGCAAGACGTCTAGTTTGATAGCCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAGAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5217#0 -TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAAC 59 consensus_5217#1 TCAAACCTG---GCAAATATATTATTTGACTAGAAGTTATTGAATGCAATGGAAGTAAAC 57 **** ** * ** * ** ** * * * *** *** ** * ** **** consensus_5217#0 AGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATAC 119 consensus_5217#1 GAT------GAAGGAATG---ATTGCTTATATACGTTA---TATTCATTGT-CTTCAGAT 104 * *** *** *** * ** ** * * ** * * *** * * consensus_5217#0 TTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTT 179 consensus_5217#1 TTTATTA-ATGTTTTATTAGCACTCTGTCCATGAAAATAACGATAAAGAGCTTCGATAAG 163 ** * ** * **** * * * * **** ** * * * * ** consensus_5217#0 AGGAACAATAAGTCTAGTGTGTGAGTT-GAAGAATTATTCTGTATAACCCTGACAAAATG 238 consensus_5217#1 AAGTTTAGCCAGTTT--TACATCAGTTAGAAGAGGTACGTT-TGTGTCAACGGCAAGACG 220 * * * *** * * * **** ***** ** * * * * * *** * * consensus_5217#0 GGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTT 298 consensus_5217#1 TCTAGT---TTGATAGCCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTT 277 * * *** * ******************************************** consensus_5217#0 CAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACC 358 consensus_5217#1 CAATGATAAACTAACAATCAATGAGAACAGTTTATCTTTAAGATATTGCTGAATTGTACC 337 ************************ *********************************** consensus_5217#0 GTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGA 418 consensus_5217#1 GTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGA 397 ************************************************************ consensus_5217#0 TTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGC 478 consensus_5217#1 TTCTTCGTAAGGCC---------------------------------------------- 411 ************** consensus_5217#0 AGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACTGTTTAACACTAAGAAA 538 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 CAAAGTATGANTAAGT 554 consensus_5217#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||