Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5255 cluster # 5255       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5255#0 length = 380 sequences # 2  
consensus_5255#1 length = 362 sequences # 1  

consensusID : consensus_5255#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 380
fasta sequence
                              [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAATAGATG]

[+] EMBL CD139126             [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAATAGATG]
[+] EMBL CD194322             [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCCATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATTATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAA      ]


>consensus_5255#0 ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGT TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTT TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA GGTAGTTGATGGAATAGATG



consensusID : consensus_5255#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence
                              [TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAAT]

[-] EMBL CD139204             [TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAAT]


>consensus_5255#1 TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGA ATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTC AAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAA TTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACT TCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTG ATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGA AT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5255#0      ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG 60
consensus_5255#1      -TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG 59
                       ***********************************************************

consensus_5255#0      AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT 120
consensus_5255#1      AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT 119
                      ************************************************************

consensus_5255#0      CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA 180
consensus_5255#1      CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA 179
                      ************************************************************

consensus_5255#0      ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGT 240
consensus_5255#1      ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCAT------------TTTTGAGGTTGT 227
                      ************************************            ************

consensus_5255#0      TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTT 300
consensus_5255#1      TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATT 287
                      ********************************************************* **

consensus_5255#0      TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA 360
consensus_5255#1      TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA 347
                      ************************************************************

consensus_5255#0      GGTAGTTGATGGAATAGATG 380
consensus_5255#1      GGTAGTTGATGGAAT----- 362
                      ***************     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)