These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 932 fasta sequence [AGNAATTCGGCACGAGGGAACACCAACAANTTTGAAAAATGAAACAGTCACTCACACTCGTCTTCTTAGTAGCCATTGGTTACGCCACCGCCCACACCACATCACATGACTATTCGGGTGGGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTAACGTAGGAGAAAACGTTAATAATGAGGAAGGCGAAGATAATAAACCCGATGAAACAGAAGAGAACGAATATAAGCCTACTAGATATGTTAAATATAAGAAATACAAACCGTCAAACAAACGCGTATCAAGCAAAACAAAATCATCCAAGAAAGGAACGAAAGGAACCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACANACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAATACANATGCNAACCACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATANCAGTGAAACTGTATANNTATATANNTATATATGGGTATACATAACCTATTATACATTACATTATAAATACAAT] [+] EMBL CD081535 [AGNAATTCGGCACGAGGGAACACCAACAANTTTGAAAAATGAAACAGTCACTCACACTCGTCTTCTTAGTAGCCATTGGTTACGCCACCGCCCACACCACATCACATGACTATTCGGGTGGGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTAACGTAGGAGAAAACGTTAATAATGAGGAAGGCGAAGATAATAAACCCGATGAAACAGAAGAGAACGAATATAAGCCTACTAGATATGTTAAATATAAGAAATACAAACCGTCAAACAAACGCGTATCAAGCAAAACAAAATCATCCAAGAAAGGAACGAAAGGAACCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACANACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAATACANATGCNAACCACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATANCAGTGAAACTGTATANNTATATANNTATATATGGGTATACATAACCTATTATACATTACATTATAAATACAAT] consensusID : consensus_528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [ACAAACGCGTATCAAGCAAAACAAAATCATCCCAGGAAAGGAACGAAAGGACCCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAAATACAAATGCAAACAACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATACAAGTGAACTGTTATAATAATAATAATAATAATAATAATGGTAATAACATAACCCTATTTATACATTACATTTAATAAATACAAATTATTTAAAAAAAAAAAA] [-] EMBL AI395476 [ACAAACGCGTATCAAGCAAAACAAAATCATCCCAGGAAAGGAACGAAAGGACCCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAAATACAAATGCAAACAACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATACAAGTGAACTGTTATAATAATAATAATAATAATAATAATGGTAATAACATAACCCTATTTATACATTACATTTAATAAATACAAATTATTTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_528#0 AGNAATTCGGCACGAGGGAACACCAACAANTTTGAAAAATGAAACAGTCACTCACACTCG 60 consensus_528#1 ------------------------------------------------------------ consensus_528#0 TCTTCTTAGTAGCCATTGGTTACGCCACCGCCCACACCACATCACATGACTATTCGGGTG 120 consensus_528#1 ------------------------------------------------------------ consensus_528#0 GGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCACACTATAACCA 180 consensus_528#1 ------------------------------------------------------------ consensus_528#0 TAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTT 240 consensus_528#1 ------------------------------------------------------------ consensus_528#0 AGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGT 300 consensus_528#1 ------------------------------------------------------------ consensus_528#0 AGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAA 360 consensus_528#1 ------------------------------------------------------------ consensus_528#0 TTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTAT 420 consensus_528#1 ------------------------------------------------------------ consensus_528#0 ACCTTCTAATTCAAACGAACAACCTAGTGGTAACGTAGGAGAAAACGTTAATAATGAGGA 480 consensus_528#1 ------------------------------------------------------------ consensus_528#0 AGGCGAAGATAATAAACCCGATGAAACAGAAGAGAACGAATATAAGCCTACTAGATATGT 540 consensus_528#1 ------------------------------------------------------------ consensus_528#0 TAAATATAAGAAATACAAACCGTCAAACAAACGCGTATCAAGCAAAACAAAATCATCC-A 599 consensus_528#1 --------------------------ACAAACGCGTATCAAGCAAAACAAAATCATCCCA 34 ******************************** * consensus_528#0 AGAAAGGAACGAAAGGAACCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAA 659 consensus_528#1 GGAAAGGAACGAAAGGACCCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAA 94 **************** ****************************************** consensus_528#0 AGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCAC 719 consensus_528#1 AGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCAC 154 ************************************************************ consensus_528#0 ANACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATT 779 consensus_528#1 AAACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATT 214 * ********************************************************** consensus_528#0 GGTAAACATAGGTGAATAAA-TACANATGCNAACCACATGAAAAATGATCTTTATATTAA 838 consensus_528#1 GGTAAACATAGGTGAATAAAATACAAATGCAAACAACATGAAAAATGATCTTTATATTAA 274 ******************** **** **** *** ************************* consensus_528#0 ACTAATATGAACTGTTTATANCAGTGAAACTGTATANNTATA-TANNTATA----TATGG 893 consensus_528#1 ACTAATATGAACTGTTTATACAAGTGAACTGTTATAATAATAATAATAATAATAATAATG 334 ******************** ****** **** *** ** *** ** * consensus_528#0 GTAT--ACATAACCTA--TTATACATTACATT--ATAAATACAAT--------------- 932 consensus_528#1 GTAATAACATAACCCTATTTATACATTACATTTAATAAATACAAATTATTTAAAAAAAAA 394 *** ******** ************** ********** consensus_528#0 --- consensus_528#1 AAA 397 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||