These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence [ATTCATATACAACTTTATTAGATTACATATTATACTGTCCAGAAAAGAACATTGATTTCAGTAATTTCCAAATGGCAAATGGAACAAAGCAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGCTAAAATGTCTCCGAAACCATTACCTTCCGTCATCTAACAAACATAGTAACTATAA] [+] EMBL CD114137 [ATTCATATACAACTTTATTAGATTACATATTATACTGTCCAGAAAAGAACATTGATTTCAGTAATTTCCAAATGGCAAATGGAACAAAGCAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGCTAAAATGTCTCCGAAACCATTACCTTCCGTCATCTAACAAACATAGTAACTATAA] [-] EMBL CD178193 [ CACATCAATGTGATGTAGGATCAANGCAAGAGGCATTCTCGTCAATCCCACCATACAAGATTGATGGCGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTAGACTGATTATATTAATGAAAGACAACAATATGAAGCTAAAATGTCTCCG ] consensusID : consensus_5280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [TCATAGCAAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGGCTGCAGTGTAAATCGAATTACCTCGGCCAACATGGCGGCCGGCA] [-] EMBL CD165525 [TCATAGCAAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGGCTGCAGTGTAAATCGAATTACCTCGGCCAACATGGCGGCCGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5280#0 ATTCATATACAACTTTATTAGATTACATATTATACTGTCCAGAAAAGAACATTGATTTCA 60 consensus_5280#1 ------------------------------------------------------------ consensus_5280#0 GTAATTTCCAAATGGCAAATGGAACAAAGCAAA-TGACTTTTGTTTTCTACGTAGTTGAC 119 consensus_5280#1 -----------------------TCATAGCAAAATGACTTTTGTTTTCTACGTAGTTGAC 37 ** ****** ************************** consensus_5280#0 ATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGG 179 consensus_5280#1 ATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGG 97 ************************************************************ consensus_5280#0 TTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTC 239 consensus_5280#1 TTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTC 157 ************************************************************ consensus_5280#0 CATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATC 299 consensus_5280#1 CATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATC 217 ************************************************************ consensus_5280#0 CCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGA 359 consensus_5280#1 CCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGA 277 ************************************************************ consensus_5280#0 GCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATC 419 consensus_5280#1 GCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATC 337 ************************************************************ consensus_5280#0 AATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAA 479 consensus_5280#1 AATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAA 397 ************************************************************ consensus_5280#0 ATACAACAATATGAAG-CTAAAATGTCTCCGAAACCATTACCTTCCGTCATCTAACAAAC 538 consensus_5280#1 ATACAACAATATGAAGGCTGCAGTGT----AAATCGAATTACCTCGGCCA--------AC 445 **************** ** * *** ** * * * * ** * ** ** consensus_5280#0 ATAGTAACTATAA 551 consensus_5280#1 ATGGCGGCCGGCA 458 ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||