These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 357 fasta sequence [TGAACTACATGAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCTTCGCGATTGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACCTATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGCAGCAACGGGGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACACCAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAACCACCGGCACAGGGAACAGCGCTGCACCATCCTCTCGTGAAGCTCGTGCCCTGGCTGA] [+] EMBL CD193928 [TGAACTACATGAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCTTCGCGATTGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACCTATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGCAGCAACGGGGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACACCAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAACCACCGGCACAGGGAACAGCGCTGCACCATCCTCTCGTGAAGCTCGTGCCCTGGCTGA] [+] EMBL CD193402 [ GAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCTTCTCGACCGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACCTATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGCAGCAGCGGCGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACACCAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAACCAC ] consensusID : consensus_5292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 91 fasta sequence [CGTAGTGAAAATACACCACTCATTTCGTGACCTCGTGCAATTTTTCATCGAGAGTGAACTACATGAACATGCTACTTNATTTGGTCGATAG] [+] EMBL CD157607 [CGTAGTGAAAATACACCACTCATTTCGTGACCTCGTGCAATTTTTCATCGAGAGTGAACTACATGAACATGCTACTTNATTTGGTCGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5292#0 TGAACTACATGAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCT 60 consensus_5292#1 --CGTAGTGAAAATACACCACTCATTTCGT---GACCTCGTGCAATTTTTCATCGAGAGT 55 ** * * *** **** ** * * ** **** * * * * consensus_5292#0 TCGCGATTGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACC 120 consensus_5292#1 GAACTACATGAACATGCTACTTNATTTGGTCGATAG------------------------ 91 * * * * * ** ***** * * consensus_5292#0 TATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGC 180 consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 AGCAACGGGGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACAC 240 consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 CAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAAC 300 consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 CACCGGCACAGGGAACAGCGCTGCACCATCCTCTCGTGAAGCTCGTGCCCTGGCTGA 357 consensus_5292#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||