These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence [CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAATAAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGTTTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAATGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGTCCCCGACAGAAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAATATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA] [+] EMBL CD078758 [CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAATAAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGTTTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAATGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGTCCCCGACAGA ] [-] EMBL CD073218 [ TGAAAATGATAAATACANATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGT CCCGACAAGAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAATATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA] consensusID : consensus_5295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [ATTGGAGACAACGATACTTTCTAGCATGCTGAGCACTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTAGAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAACTTGTGAGAGATTGCGATCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAAGTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGAACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGATAGTCCCGACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG] [+] EMBL CD136940 [ATTGGAGACAACGATACTTTCTAGCATGCTGAGCACTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTAGAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAACTTGTGAGAGATTGCGATCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAAGTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGAACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGATAGTCCCGACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5295#0 CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAAT 60 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 AAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGT 120 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 TTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAA 180 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 TGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATA 240 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 ACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTA 300 consensus_5295#1 -------------------------ATTGGAGACAACGATACTTTCTAGCATGCTGAGCA 35 * **** ***** * * ** *** **** * consensus_5295#0 CTAATGCCTTATGGACTGAAAAAGAACAA-AGGGCTACAGTTATTATAGTCGTAGCGTTA 359 consensus_5295#1 CTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTA 95 ****************** * **** *** ******** ********** ** ***** consensus_5295#0 GTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCA 419 consensus_5295#1 GAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAAC-TTGTGAGAGATTGCG 154 * **** * ********* * ** * * ** ********* *** *** ** *** * consensus_5295#0 AATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAA 479 consensus_5295#1 A-TCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAA 213 * * * ***** **** ***** **** ** ** **** * * *************** consensus_5295#0 ATTAACAAAGTAGAAGAGAGAGGGAATTATT-CGTGTATACTCAATGATAACCTCAGCGA 538 consensus_5295#1 GTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGA 273 ****** **** ** *********** *** ** ************** ********** consensus_5295#0 ACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAA 598 consensus_5295#1 ACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGAT 333 ******* **************** ********* ************************ consensus_5295#0 AGTCCCCGACAGAAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCA 658 consensus_5295#1 AGTCCC-GACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCA 392 ****** *** * ****** * ************************************ consensus_5295#0 TGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAA 718 consensus_5295#1 TGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG---------- 442 *********************** ************************** consensus_5295#0 TATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA 770 consensus_5295#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||