These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence [ATTGAGTTAGAAGATATCGTGGGTAATGAGAATACTATTTGTCGTCTATCCGTTTTCGCTCGTGACGGCAACTTACCGAACATCATAATAGCTGGTCCTCCAGGTTGTGGAAAAACCACAAGTATCTTATGCTTGGCTCGTACTCTGCTGAAGAGTGCTTATAAGGAAGCGGTCCTTGAGTTAAATGCATCGAACGAAAGGGGTATCGAAGTAGTAAGAACTAAAATCAAAATGTTCGCCCAGAAAAAGGTCAGTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGCATGACTGAAGGTGCTCAACAGGCACTTCGACGGATCATGGAGTTATACTCTCGAACAACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGATGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAAGTTTCGCGTTTCG-AGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAGCGGACGGTGACATGAGACAGGCTCTAAATAATCTACAATCAACTCATGAAGGCTTTGGGATGGTCAGTAGCGATAACGTCTTTAAAGTTTGTGATGAACCTCACCCAATGCTTATTAAACAGTTGATCGACCATTGTTCTAAGGGTGAATTGTCAGCTGCTCACAAGATCTTGCGTCATTTATGGACTTTGGGGTATTCAGCTGAAGATATTATCAACATCAC] [+] EMBL AI977744 [ATTGAGTTAGAAGATATCGTGGGTAATGAGAATACTATTTGTCGTCTATCCGTTTTCGCTCGTGACGGCAACTTACCGAACATCATAATAGCTGGTCCTCCAGGTTGTGGAAAAACCACAAGTATCTTATGCTTGGCTCGTACTCTGCTGAAGAGTGCTTATAAGGAAGCGGTCCTTGAGTTAAATGCATCGAACGAAAGGGGTATCGAAGTAGTAAGAACTAAAATCAAAATGTTCGCCCAGAAAAAGGTCAGTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGCATGACTGAAGGTGCTCAACAGGCACTTCGACGGATCATGGAGTTATACTCTCGAACAACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGATGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAAGTTTCGCGTTTCG AGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAGCGGACGGTG ] [+] EMBL CD138695 [ AGTTATACTCTCGAACAACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGATGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAAGTTTCGCGTTTCGAAGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAGCGGACGGTGACATGAGACAGGCTCTAAATAATCTACAATCAACTCATGAAGGCTTTGGGATGGTCAGTAGCGATAACGTCTTTAAAGTTTGTGATGAACCTCACCCAATGCTTATTAAACAGTTGATCGACCATTGTTCTAAGGGTGAATTGTCAGCTGCTCACAAGATCTTGCGTCATTTATGGACTTTGGGGTATTCAGCTGAAGATATTATCAACATCAC] consensusID : consensus_5297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [GTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGGTTAGTTGTTTATTCTATATGAGACTTTGCAGACATTGAAGCTTTAATCCCATAGTATTGGTGGTGACTACCTAAACCCATTGTGTTTTCTTTGTTACGTTGACTACTTTTTCGTATTTAATAGTAATACAGACCCATCGAATAGCCCGTTCTTACTAATTAATAGTGTCCCTGAGCTTTGGTTAACAGCCGCCACTTATAGTTAGTGTTACTTTATCTCTACCATAGTACGCCTGACGCGATTGTGGTCACTTCTACTCTCGCATTCCGTACAAGTCAGAATAAACCAAGTTAATTCTCTGCAACCTATCATCATCAGTATTACCAAACTTTAAGTATTTAGTCTGCAATTCTTGTCTTGTCTTTTTTGGTTGCAAAAACTTGGCCAGTAGCTGGCAGGAAAAAAG] [+] EMBL AW017230 [GTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGGTTAGTTGTTTATTCTATATGAGACTTTGCAGACATTGAAGCTTTAATCCCATAGTATTGGTGGTGACTACCTAAACCCATTGTGTTTTCTTTGTTACGTTGACTACTTTTTCGTATTTAATAGTAATACAGACCCATCGAATAGCCCGTTCTTACTAATTAATAGTGTCCCTGAGCTTTGGTTAACAGCCGCCACTTATAGTTAGTGTTACTTTATCTCTACCATAGTACGCCTGACGCGATTGTGGTCACTTCTACTCTCGCATTCCGTACAAGTCAGAATAAACCAAGTTAATTCTCTGCAACCTATCATCATCAGTATTACCAAACTTTAAGTATTTAGTCTGCAATTCTTGTCTTGTCTTTTTTGGTTGCAAAAACTTGGCCAGTAGCTGGCAGGAAAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5297#0 ATTGAGTTAGAAGATATCGTGGGTAATGAGAATACTATTTGTCGTCTATCCGTTTTCGCT 60 consensus_5297#1 ------------------------------------------------------------ consensus_5297#0 CGTGACGGCAACTTACCGAACATCATAATAGCTGGTCCTCCAGGTTGTGGAAAAACCACA 120 consensus_5297#1 ------------------------------------------------------------ consensus_5297#0 AGTATCTTATGCTTGGCTCGTACTCTGCTGAAGAGTGCTTATAAGGAAGCGGTCCTTGAG 180 consensus_5297#1 ------------------------------------------------------------ consensus_5297#0 TTAAATGCATCGAACGAAAGGGGTATCGAAGTAGTAAGAACTAAAATCAAAATGTTCGCC 240 consensus_5297#1 ------------------------------------------------------------ consensus_5297#0 CAGAAAAAGGTCAGTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGAC 300 consensus_5297#1 -------------GTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGAC 47 *********************************************** consensus_5297#0 AGCATGACTGAAGGTGCTCAACAGGCACTTCGACGGATCATGGAGTTATACTCTCGAACA 360 consensus_5297#1 AGGTTAGTTGTTTATTCTATATGAG-ACTTTG-CAGACATTGAAGCTTTAATCCCATA-- 103 ** * ** * ** * * **** * * ** ** ** * ** ** * * consensus_5297#0 ACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGA 420 consensus_5297#1 ---------GTATTGG----TGGTGACTACCTAAA-CCCAT------------------- 130 * ***** * *** * * *** * *** consensus_5297#0 TGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAA 480 consensus_5297#1 TGTGTT-TTCTTTGTTACGTTGACT--ACTTTTTCGTATTTAATAGTAATAC----AGAC 183 **** * ** * **** * * * ** * * * * **** * * * *** consensus_5297#0 GTTTCGCGTTTCGAGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAG 540 consensus_5297#1 CCATCGAATAGCCCGTTCTTACTAAT---TAATAGTGTCCCTGAGC--TTTGGTTAACAG 238 *** * * * * ** * ** ** * ** *** ** *** **** consensus_5297#0 CGGACGGTGACA-TGAGACAGGCTCTAAATAATCTACAATCAACTCATGAAGGCTTTGGG 599 consensus_5297#1 CCGCCACTTATAGTTAGTGTTACTTTATCTCTACCATAGT--ACGCCTGACGCGATTGTG 296 * * * * * * * ** ** ** * * * * * ** * *** * *** * consensus_5297#0 ATGGTCAGTAGCGATAACGTCTTTAAAGTTTGTGATGAACCTCACCCAATGCTTATTAAA 659 consensus_5297#1 GTCACTTCTACTCTCGCATTCCGTACAAGTCAGAATAAACCA-AGTTAATTCTCTGCAAC 355 * ** ** ** * * ** **** * *** ** ** consensus_5297#0 CAGTTGATCGACCATTGTTCTAAGGGTGAATTGTCAGCTGCTCACAAGATCTTGCGTCAT 719 consensus_5297#1 CTATC-ATCATCAGTATTACCAAACTTTAAGTATTTAGTCTGCAATTCTTGTCTTGTCTT 414 * * *** * * * * ** * ** * * * ** * * *** * consensus_5297#0 TTATGGACTTTGGGGTATTCAGCTGAAGATATTATCAACATCAC 763 consensus_5297#1 TTTTGG-TTGCAAAAACTTGGCCAGTAGCTGGCAGGAAAAAAG- 456 ** *** * ** * * ** * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||