These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [AGTATTTTTTCCAGCATGAACAATGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAAAAAACTGAGAACACTTATGTGCTNAAAGGCACTTTCTGATGTTG] [+] EMBL CD113852 [AGTATTTTTTCCAGCATGAACAATGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAAAAAACTGAGAACACTTATGTGCTNAAAGGCACTTTCTGATGTTG] [+] EMBL CD113851 [AGTATTTTTTCCAGCATGAACAATGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAAAATACACACACACACATACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAA ] consensusID : consensus_5307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TCCTAGCTGTAAACCTGTGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACGACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTCTTTAACAAGAAAAACAATCAAACCAAAAAAAACTGAGAACACTTATGTGCTAAAGGCCACTTTCT] [+] EMBL CD113869 [TCCTAGCTGTAAACCTGTGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACGACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTCTTTAACAAGAAAAACAATCAAACCAAAAAAAACTGAGAACACTTATGTGCTAAAGGCCACTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5307#0 AGTATTTTTTCCAGC-ATGAACA-ATGATGAAATTGAACACTGATAAGAAAACTATACTA 58 consensus_5307#1 --------TCCTAGCTGTAAACCTGTGATGAAATTGAACACTGATAAGAAAACTATACTA 52 * * *** * *** *********************************** consensus_5307#0 TTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCAT 118 consensus_5307#1 TTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCAT 112 ************************************************************ consensus_5307#0 TTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAA 178 consensus_5307#1 TTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAA 172 ************************************************************ consensus_5307#0 CCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAG 238 consensus_5307#1 CCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAG 232 ************************************************************ consensus_5307#0 ATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATA 298 consensus_5307#1 ATGAATGCTCTATAATTAACACGACAAACTAGACTCAATAGGATTATCTCCAAAAAAATA 292 ********************** ************************************* consensus_5307#0 ATCCAAACTACATACATACATACAACATACACACACACACATACACACACAC--TGTTGA 356 consensus_5307#1 ATCCAAACTACATACATACATACAACATACACACACACACATACACACACACACTGTTGA 352 **************************************************** ****** consensus_5307#0 ACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATT 416 consensus_5307#1 ACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATT 412 ************************************************************ consensus_5307#0 TTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAAAAA 476 consensus_5307#1 TTAAAACAAAAATTACAAAAAAAAGTTTCTTTAACAAGAAAAACAATCAAACCAAAAAAA 472 **************************** ***** **************** ******** consensus_5307#0 ACTGAGAACACTTATGTGCTNAAAGGCACTTTCTGATGTTG 517 consensus_5307#1 ACTGAGAACACTTATGTGCTAAAGGCCACTTTCT------- 506 ******************** ** * ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||