|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1130 fasta sequence
[GAGGCCTGNATTCGGCACCAGGTTTGTCATAGATCTACATCTTAGTTTTTCTGTTAAATTCCTTCCATTAAATATTTATTGATTTCTCTTGGAATAGTAAATTAAACGTCTGGAATAATTAAACATACTATTGATTATATTTGTAAATATATCACATCAATTTCTGTTTTTACAATCACCATCAGTTCTGTCCTCGTGTTATTCACTGCAAAAACATGTATCATTTCCATCCATTACTCACTGTTATACTGACACATAAGGTGGAATCTTTGCCGGAAAGACAGATTTTCTCTATAACATTTGATGAATGACCAATAAGATATTTTGAATGTACATGATTTCTTCCAGTTGGAAATTTGTTGGGTGTGAAGTTGAGAGGTAACTATTTTAAGAAATAATAAACATATGCTCAGTAGTTTCTGGTGTGAAACTATGATTAGTATAAACAACCAAATCGACAACTAAACAGTTACTCATTAACTTCATTAGGTACTGATTTCTGTATATTCCAAAAATAACTGAGGTTGAAAATTAAGTATTATTGAATTTCGATTCGATAGTACTATGATATTAATTTTATCGTAAAACTTAGAGATACTTTTGATACAGAATACACGGAATGTGTCTTATAGTGCAATCCAGGACGCTCATTTTATCCCATTTGGGACTCATCGGCTGAATTTACCTCCGTCTCTAGCCATTTCAAATTCAATTAGAGGTACTGTATTAAATCTTATAGAAGGTTATTTTTTAGGACTGATATTGAGTTGTAGACTTAGACAAAACAGATGCATTATAGTGTTTAATAGTTCTCTATTTAACGCTTGTTGAATGTGTAAAATATCTTCAAAAAATAGTACTGAATTTACAAGAGTCATGTCTTTTAATTATNTTTGGCAGCTTCATTNTATTTAATTNNNAATAACTTCAATCATTTTCTATAATTGTACAANTATTTGCGTCGAATGAGAAATCGATTTGACCAAATACTTGATACATGTGAATGTGTAGACATTCCGTCTAATNAGTTTACTACGTGTACTACAAGACCTGAGCTATGTACGTCAATCTGATATATTATTGTAACACTATTTATGTACTTTGGAAATGTTCGTAGCTGGATGATTTCA]
[+] EMBL CD081549 [GAGGCCTGNATTCGGCACCAGGTTTGTCATAGATCTACATCTTAGTTTTTCTGTTAAATTCCTTCCATTAAATATTTATTGATTTCTCTTGGAATAGTAAATTAAACGTCTGGAATAATTAAACATACTATTGATTATATTTGTAAATATATCACATCAATTTCTGTTTTTACAATCACCATCAGTTCTGTCCTCGTGTTATTCACTGCAAAAACATGTATCATTTCCATCCATTACTCACTGTTATACTGACACATAAGGTGGAATCTTTGCCGGAAAGACAGATTTTCTCTATAACATTTGATGAATGACCAATAAGATATTTTGAATGTACATGATTTCTTCCAGTTGGAAATTTGTTGGGTGTGAAGTTGAGAGGTAACTATTTTAAGAAATAATAAACATATGCTCAGTAGTTTCTGGTGTGAAACTATGATTAGTATAAACAACCAAATCGACAACTAAACAGTTACTCATTAACTTCATTAGGTACTGATTTCTGTATATTCCAAAAATAACTGAGGTTGAAAATTAAGTATTATTGAATTTCGATTCGATAGTACTATGATATTAATTTTATCGTAAAACTTAGAGATACTTTTGATACAGAATACACGGAATGTGTCTTATAGTGCAATCCAGGACGCTCATTTTATCCCATTTGGGACTCATCGGCTGAATTTACCTCCGTCTCTAGCCATTTCAAATTCAATTAGAGGTACTGTATTAAATCTTATAGAAGGTTATTTTTTAGGACTGATATTGAGTTGTAGACTTAGACAAAACAGATGCATTATAGTGTTTAATAGTTCTCTATTTAACGCTTGTTGAATGTGTAAAATATCTTCAAAAAATAGTACTGAATTTACAAGAGTCATGTCTTTTAATTATNTTTGGCAGCTTCATTNTATTTAATTNNNAATAACTTCAATCATTTTCTATAATTGTACAANTATTTGCGTCGAATGAGAAATCGATTTGACCAAATACTTGATACATGTGAATGTGTAGACATTCCGTCTAATNAGTTTACTACGTGTACTACAAGACCTGAGCTATGTACGTCAATCTGATATATTATTGTAACACTATTTATGTACTTTGGAAATGTTCGTAGCTGGATGATTTCA]
consensusID : consensus_5312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[CTTTTGATACAGAATACACGGAATGTGTCTTATAGTGCAATCCAGGACGCTCATTTTATCCCATTTGGGACTCATCGGCTGAATTTACCTCCGTCTCTAGCCATTTCAAATTCAATTAGAGGTACTGTATTAAATCTTATAGAAGGTTATTTTTTAGGACTGATATTGAGTTGTAGACTTAGACAAAACAGATGCATTATAGTGTTTAATAGTTCTCTATTTAACGCTTGTTGAATGTGTAAAATATCTTCAAAAAAATAGTACTGAATTTACAAGAGTCATGTCTTTTAATTATTTTTGGCAGCTTCATTTTATTTAATTTAAATAAACTTCAATCATTTCTATAAATTGTACAATTATTTGCGTCGAATGAAGAAATCGATTTGGACAAAATTACTTGATAACATGTGAAATGTGTAGAACATTCCGTTCTTAATTCAGTTTTACTAACGTGGTACCTACAAAGACCTTGAGGCTATTGATAACGTTCATATTCTGAATAAATATTTATTTGTTAAACAACCTATTTTATTGTTTATCTTTTGTGAAAAATTGTTTCCGTTAGGCTGTGAATTGATATTTCAAACTGAAT]
[-] EMBL CD075374 [CTTTTGATACAGAATACACGGAATGTGTCTTATAGTGCAATCCAGGACGCTCATTTTATCCCATTTGGGACTCATCGGCTGAATTTACCTCCGTCTCTAGCCATTTCAAATTCAATTAGAGGTACTGTATTAAATCTTATAGAAGGTTATTTTTTAGGACTGATATTGAGTTGTAGACTTAGACAAAACAGATGCATTATAGTGTTTAATAGTTCTCTATTTAACGCTTGTTGAATGTGTAAAATATCTTCAAAAAAATAGTACTGAATTTACAAGAGTCATGTCTTTTAATTATTTTTGGCAGCTTCATTTTATTTAATTTAAATAAACTTCAATCATTTCTATAAATTGTACAATTATTTGCGTCGAATGAAGAAATCGATTTGGACAAAATTACTTGATAACATGTGAAATGTGTAGAACATTCCGTTCTTAATTCAGTTTTACTAACGTGGTACCTACAAAGACCTTGAGGCTATTGATAACGTTCATATTCTGAATAAATATTTATTTGTTAAACAACCTATTTTATTGTTTATCTTTTGTGAAAAATTGTTTCCGTTAGGCTGTGAATTGATATTTCAAACTGAAT]
consensusID : consensus_5312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[CAAATGAGTTAAAAAGTGAGAGATAGAAATACTATCGATGTGTTTCATGGACAGAAATATTTTGCTATGGTTTTTTATCAGTTCGCAATCCCATATTAGATAGAGATTGTACGATCCAGTCAGTCCCATACATCTTACAACTTTATTGTTTGTCATAGATCTACATCTTAGTTTTTCTGTTAAATTCCTCCATTAAATATTTATTGATTTCTCTTGGAATAGTAAATTAAACGTCTGGAATAATTAAACATACTATTGATTATATTTGTAAATATATCACATCAATTTCTGTTTTTACAATCACCATCAGTTCT]
[-] EMBL CD165208 [CAAATGAGTTAAAAAGTGAGAGATAGAAATACTATCGATGTGTTTCATGGACAGAAATATTTTGCTATGGTTTTTTATCAGTTCGCAATCCCATATTAGATAGAGATTGTACGATCCAGTCAGTCCCATACATCTTACAACTTTATTGTTTGTCATAGATCTACATCTTAGTTTTTCTGTTAAATTCCTCCATTAAATATTTATTGATTTCTCTTGGAATAGTAAATTAAACGTCTGGAATAATTAAACATACTATTGATTATATTTGTAAATATATCACATCAATTTCTGTTTTTACAATCACCATCAGTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5312#0 GAGGCCTGNATTCGGCACCAGGTTTGTCATAGATCTACATCTTAGTTTTTCTGTTAAATT 60
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 CCTTCCATTAAATATTTATTGATTTCTCTTGGAATAGTAAATTAAACGTCTGGAATAATT 120
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 AAACATACTATTGATTATATTTGTAAATATATCACATCAATTTCTGTTTTTACAATCACC 180
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 ATCAGTTCTGTCCTCGTGTTATTCACTGCAAAAACATGTATCATTTCCATCCATTACTCA 240
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 CTGTTATACTGACACATAAGGTGGAATCTTTGCCGGAAAGACAGATTTTCTCTATAACAT 300
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 TTGATGAATGACCAATAAGATATTTTGAATGTACATGATTTCTTCCAGTTGGAAATTTGT 360
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 TGGGTGTGAAGTTGAGAGGTAACTATTTTAAGAAATAATAAACATATGCTCAGTAGTTTC 420
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 TGGTGTGAAACTATGATTAGTATAAACAACCAAATCGACAACTAAACAGTTACTCATTAA 480
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 CTTCATTAGGTACTGATTTCTGTATATTCCAAAAATAACTGAGGTTGAAAATTAAGTATT 540
consensus_5312#1 ------------------------------------------------------------
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 ATTGAATTTCGATTCGATAGTACTATGATATTAATTTTATCGTAAAACTTAGAGATACTT 600
consensus_5312#1 ---------------------------------------------------------CTT 3
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 TTGATACAGAATACACGGAATGTGTCTTATAGTGCAATCCAGGACGCTCATTTTATCCCA 660
consensus_5312#1 TTGATACAGAATACACGGAATGTGTCTTATAGTGCAATCCAGGACGCTCATTTTATCCCA 63
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 TTTGGGACTCATCGGCTGAATTTACCTCCGTCTCTAGCCATTTCAAATTCAATTAGAGGT 720
consensus_5312#1 TTTGGGACTCATCGGCTGAATTTACCTCCGTCTCTAGCCATTTCAAATTCAATTAGAGGT 123
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 ACTGTATTAAATCTTATAGAAGGTTATTTTTTAGGACTGATATTGAGTTGTAGACTTAGA 780
consensus_5312#1 ACTGTATTAAATCTTATAGAAGGTTATTTTTTAGGACTGATATTGAGTTGTAGACTTAGA 183
consensus_5312#2 -------CAAATGAGTTAAAAAGTGAGAGAT-AGAAATACTATCGATGTGTTT-CATGGA 51
**** ** ** ** * * ** * * *** ** *** * * **
consensus_5312#0 CAAAACAGATGCATTATAGTGTTTAAT-AGTTCTCTATTTAACGCTTGTTGAATGTGTAA 839
consensus_5312#1 CAAAACAGATGCATTATAGTGTTTAAT-AGTTCTCTATTTAACGCTTGTTGAATGTGTAA 242
consensus_5312#2 CAGAAATATTTTGCTATGGTTTTTTATCAGTTCGCAATCCCA----TATTAGATAGAGAT 107
** ** * *** ** *** ** ***** * ** * * ** ** *
consensus_5312#0 AATATCTTCAAAAAA-TAGTACTGAATTTACAAGAGTCATGTCTTTTAATTATNTTTGGC 898
consensus_5312#1 AATATCTTCAAAAAAATAGTACTGAATTTACAAGAGTCATGTCTTTTAATTATTTTTGGC 302
consensus_5312#2 TGTACGATCCAGTCAGTCCCATACATCTTACAACTTTATTGTTTGTCATAGATCTACATC 167
** ** * * * * * ****** * *** * * * ** * *
consensus_5312#0 AGCTTCATTNTATTTAATTNN---NAATAAC-TTCAATCATTTTCTA--TAATTGTACAA 952
consensus_5312#1 AGCTTCATTTTATTTAATTTA---AATAAAC-TTCAATCATTTCTAT--AAATTGTACAA 356
consensus_5312#2 TTAGTTTTTCTGTTAAATTCCTCCATTAAATATTTATTGATTTCTCTTGGAATAGTA-AA 226
* ** * ** **** ** ** * * **** *** *** **
consensus_5312#0 NTATTTGCGTCGAATGA-GAAATCGATTTGACCAAA--TACTTGATA-CATGTGAA-TGT 1007
consensus_5312#1 TTATTTGCGTCGAATGAAGAAATCGATTTGGACAAAATTACTTGATAACATGTGAAATGT 416
consensus_5312#2 TTAAACGTCTGGAATAATTAAAC--ATACTATTGATTATATTTGTAAATATATCACATCA 284
** * * **** * *** ** * ** *** * ** * * *
consensus_5312#0 GTAGA-CATTCCGTC--TA-ATNAG--TTTACTA-CGTG-TAC-TACAA-GACCT--GAG 1055
consensus_5312#1 GTAGAACATTCCGTTCTTA-ATTCAGTTTTACTAACGTGGTACCTACAAAGACCTTGAGG 475
consensus_5312#2 AT------TTCTGTTTTTACAATCACCATCAGTTCT------------------------ 314
* *** ** ** * * * *
consensus_5312#0 CTAT-----------GTACGTCAATCTGATATATTATTGTAACACTATTTATGTACTTTG 1104
consensus_5312#1 CTATTGATAACGTTCATATTCTGAATAAATATTTATTTGTTAAACAACCTATTTTATTGT 535
consensus_5312#2 ------------------------------------------------------------
consensus_5312#0 GAAATGTTCGTAGCTGGATGATTTCA------------------------------- 1130
consensus_5312#1 TTATCTTTTGTGAAAAATTGTTTCCGTTAGGCTGTGAATTGATATTTCAAACTGAAT 592
consensus_5312#2 ---------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||