These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [ACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATGTAAATATTTTATTGTATTATATTTTGTTTATCTATAGTATTAGTGTTAAATTCACAAAAGGTCTTTGTATAATAGTTATAGATATAGGAGGAAATTGTTGATAGTTGTTCTACATTTTTTGTGGAAGCGTTTGAGCTGTACACACAAACATAAGCAGCGATAACCAACTTGTTTAATGATCGAGTTGAATGTTGGATCACCTAACCCTTGATGATATCATAAAACTATTTATGATCAATCTCATTTTCCACTGTTGAGGAATTTTAATTGTAGTCAGTTTGCTCTATATCATATAATTCTATATGTGTCTCTGTACAGTATATTTAGTTTTGGCCCAGTTATAGTGTT] [+] EMBL CD129443 [ACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATGTAAATATTTTATTGTATTATATTTTGTTTATCTATAGTATTAGTGTTAAATTCACAAAAGGTCTTTGTATAATAGTTATAGATATAGGAGGAAATTGTTGATAGTTGTTCTACATTTTTTGTGGAAGCGTTTGAGCTGTACACACAAACATAAGCAGCGATAACCAACTTGTTTAATGATCGAGTTGAATGTTGGATCACCTAACCCTTGATGATATCATAAAACTATTTATGATCAATCTCATTTTCCACTGTTGAGGAATTTTAATTGTAGTCAGTTTGCTCTATATCATATAATTCTATATGTGTCTCTGTACAGTATATTTAGTTTTGGCCCAGTTATAGTGTT] consensusID : consensus_5376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [TTTTCTGCAAGGTTTAACTGATTATCTTGTTGATGAGGGAAATGCTGAAGAAGAATTTCTTTTGTTAGGCGGTATGCAGTCCATTTCATTTCAACCATCTTCAATAACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCCGATGTGATTTGGGTTTGCCCGTTGTCAATAAAAAGTTTCGAGATCCAATCTACGTTAAGAAACATATCCTGAAT] [+] EMBL BF936449 [TTTTCTGCAAGGTTTAACTGATTATCTTGTTGATGAGGGAAATGCTGAAGAAGAATTTCTTTTGTTAGGCGGTATGCAGTCCATTTCATTTCAACCATCTTCAATAACAAAAGGAACCCTAATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATATTACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAATTTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGAAGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTACTAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCATTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCCGATGTGATTTGGGTTTGCCCGTTGTCAATAAAAAGTTTCGAGATCCAATCTACGTTAAGAAACATATCCTGAAT] consensusID : consensus_5376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [TGATGGTTACGGTTACAAATGTATATGGATATTTTATTTTTTGCTAAAATTAATTAGCTCTCAAATTTTCCAAAATGTTATTTCTCCTACACAATCTAGTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCGTATGTGTAAAGTTTATACAAATATGTATTGTTATTATTAATTATTTACTACAAAGTAGGTTTTTTATTATTTGATGGGTGAATTTTCGGTTGTTAAAAGGAGAAAAAATATGTTAATGGGT] [+] EMBL CD187357 [TGATGGTTACGGTTACAAATGTATATGGATATTTTATTTTTTGCTAAAATTAATTAGCTCTCAAATTTTCCAAAATGTTATTTCTCCTACACAATCTAGTTATTTGCCAGTCAAATAAAACGTTTAGTACGACTCATTACTCCGCTCACGGAAAATGATTGTAAAAGTTTGGGTTATAGAAATGCAGATGATGTTGTGGAAGAATTCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCGTATGTGTAAAGTTTATACAAATATGTATTGTTATTATTAATTATTTACTACAAAGTAGGTTTTTTATTATTTGATGGGTGAATTTTCGGTTGTTAAAAGGAGAAAAAATATGTTAATGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5376#0 ------------------------------------------------------------ consensus_5376#1 TTTTCTGCAAGGTTTAACTGATTATCTTGTTGATGAGGGAAATGCTGAAGAAGAATTTCT 60 consensus_5376#2 ------------------------------------------------------------ consensus_5376#0 ----------------------------------------------ACAAAAGGAACCCT 14 consensus_5376#1 TTTGTTAGGCGGTATGCAGTCCATTTCATTTCAACCATCTTCAATAACAAAAGGAACCCT 120 consensus_5376#2 ------------------------------------------------------------ consensus_5376#0 AATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATAT 74 consensus_5376#1 AATTAATAATTCACAAGTTATGAATCTACAATCATCATTACAATTACAAAAACTTGATAT 180 consensus_5376#2 ------------------------------------------------------------ consensus_5376#0 TACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAAT 134 consensus_5376#1 TACTTCACCATTTTATGAATCAGATGATAGTGAATTATTAGTTGTATTGGATCGTTTAAT 240 consensus_5376#2 ------------------------------------------------------------ consensus_5376#0 TTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGA 194 consensus_5376#1 TTTATATTTAAGAATAGTACATTCAGTAGATTTTTATTCACCTGCATTTTATATGAATGA 300 consensus_5376#2 ------------------------------------------------------------ consensus_5376#0 AGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTAC 254 consensus_5376#1 AGATTTAATGCCACATCCATGTCGTCTTATACATATTCGACCTGGTTTAAATGAAATTAC 360 consensus_5376#2 ----TGATGGTTACGGTTACAAATGTATATGGATATTTTATTT---TTTGCTAAAATTAA 53 * * * ** * *** ***** * * ** * ****** consensus_5376#0 TAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCA 314 consensus_5376#1 TAAAGCTTTAACACAAATTAAAAATCCAGAAAAATTAATCAATTCAGAATTAGTTGATCA 420 consensus_5376#2 TTA-GCTCT----CAAATT-----TTCCAAAATGTTATTTCTCCTACA------CAATCT 97 * * *** * ****** * * *** *** * * * *** consensus_5376#0 TGTAAATATTTTATTGTATTATATTTTGTTTATCTATAGTATTAGTGTTAAATTCACAAA 374 consensus_5376#1 TTT----ATTTGCCAGTCAAATAAAACGTTTAG-TACGAC-TCATTACTCCGCTCACGGA 474 consensus_5376#2 AGT---TATTTGCCAGTCAAATAAAACGTTTAG-TACGAC-TCATTACTCCGCTCACGGA 152 * **** ** *** ***** ** * * * * **** * consensus_5376#0 AGGTCTTTGTATAATAGTTATAGATATAGGAGGAAATTGTTGATAGTTGTTCTACATTTT 434 consensus_5376#1 AAATGATTGTAAAA--GTTTGGGTTATAGAAA-----TGCAGATGATGTTGTGGAAGAAT 527 consensus_5376#2 AAATGATTGTAAAA--GTTTGGGTTATAGAAA-----TGCAGATGATGTTGTGGAAGAAT 205 * * ***** ** *** * ***** * ** *** * * * * consensus_5376#0 TTGTGGAAGCGTTTGAGCTGTACACACAAACATAAGCAGCGATAACC--AACTTGTTTAA 492 consensus_5376#1 TCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCCGATGTGATTTGGGTTTGCCCGT 587 consensus_5376#2 TCATAAAATTGAATACACGTCGGAAAAAACGAAAGGCGTATGTGTAA--AGTTTATACAA 263 * * ** * * * * * ** * * ** * ** consensus_5376#0 TGATCGAGTTGAATGTTGGATCACCTAACCCTTGATGATATCATAAAACTATTTATGATC 552 consensus_5376#1 TGTC--AATAAAAAGTTTCGAGATCCAATCT------ACGTTAAGAAACATATCCTGAAT 639 consensus_5376#2 ATATGTATTGTTATTATTAATTATTTACTACAAAGT-AGGTTTTTTATTATTTGATGGGT 322 * * * * * * * * * * ** consensus_5376#0 AATCTCATTTTCCACTGTTGAGGAATTTTAATTGTAGTCAGTTTGCTCTATATCATATAA 612 consensus_5376#1 ------------------------------------------------------------ consensus_5376#2 GA----ATTTTCGGTTGTTAAAAGGAGAAAAAATATGTTAATGGGT-------------- 364 consensus_5376#0 TTCTATATGTGTCTCTGTACAGTATATTTAGTTTTGGCCCAGTTATAGTGTT 664 consensus_5376#1 ---------------------------------------------------- consensus_5376#2 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||