cluster # 5429

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Schistosoma mansoni
cluster # 5429 cluster # 5429 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5429#0 length = 346 sequences # 2

consensus_5429#1 length = 257 sequences # 1

consensusID : consensus_5429#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 346
fasta sequence

                              [ATCTCGATTAAGTTCGCATGATATTTTGTTCGAAGGCTCTTCATTTGAGTTACAGGAATCTGTTTTTCGAAATGATCGATATGGACTATATTTTGTAGGTGAAAAAGGTTTCACGTGGAAAGGTCTTCGAGCATACGAAACACGCAAAAGACGATTGCTTACCATTTGGTGATCCAGCTTCAATGCACTTTGGGCCATTTGATTCGTAGCCATTGTAACGTAGGCATGGTTGGAGGGATTACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAAAGGTTCAGTGATATTATGATACCCAACATATAAGGTAGAGTGTGTCGGTCGG]

[+] EMBL CD120385             [ATCTCGATTAAGTTCGCATGATATTTTGTTCGAAGGCTCTTCATTTGAGTTACAGGAATCTGTTTTTCGAAATGATCGATATGGACTATATTTTGTAGGTGAAAAAGGTTTCACGTGGAAAGGTCTTCGAGCATACGAAACACGCAAAAGACGATTGCTTACCATTTGGTGATCCAGCTTCAATGCACTTTGGGCCATTTGATTCGTAGCCATTGTAACGTAGGCATGGTTGGAGGGATTACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAAAGGTTCAGTGATATTATG                                  ]
[+] EMBL CD192484             [                                                                                                                                                                                                                                    cTTGGAGGGATTACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAAAGGTTCAGTGATATTATGATACCCAACATATAAGGTAGAGTGTGTCGGTCGG]




>consensus_5429#0
ATCTCGATTAAGTTCGCATGATATTTTGTTCGAAGGCTCTTCATTTGAGTTACAGGAATC
TGTTTTTCGAAATGATCGATATGGACTATATTTTGTAGGTGAAAAAGGTTTCACGTGGAA
AGGTCTTCGAGCATACGAAACACGCAAAAGACGATTGCTTACCATTTGGTGATCCAGCTT
CAATGCACTTTGGGCCATTTGATTCGTAGCCATTGTAACGTAGGCATGGTTGGAGGGATT
ACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAAAGGTTC
AGTGATATTATGATACCCAACATATAAGGTAGAGTGTGTCGGTCGG

consensusID : consensus_5429#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence

                              [ACCGAATGCATCAAACATACTAAGGTTACAAAGATATGTGGTGATGAGCTTATTTTTATTGACAAATTATAGCAGGAAAACATAATTCATGCCTCATAAACCTAATTGGATCTTTTGAATAATTACCAAGGTTTCTTAGAACATCAGAGACGTACTTGGAGGGATTACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAAAGGTTCAGTGATATTATGATACCCAACATATAAGGTA]

[+] EMBL CD193604             [ACCGAATGCATCAAACATACTAAGGTTACAAAGATATGTGGTGATGAGCTTATTTTTATTGACAAATTATAGCAGGAAAACATAATTCATGCCTCATAAACCTAATTGGATCTTTTGAATAATTACCAAGGTTTCTTAGAACATCAGAGACGTACTTGGAGGGATTACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAAAGGTTCAGTGATATTATGATACCCAACATATAAGGTA]




>consensus_5429#1
ACCGAATGCATCAAACATACTAAGGTTACAAAGATATGTGGTGATGAGCTTATTTTTATT
GACAAATTATAGCAGGAAAACATAATTCATGCCTCATAAACCTAATTGGATCTTTTGAAT
AATTACCAAGGTTTCTTAGAACATCAGAGACGTACTTGGAGGGATTACCAATCCTAATCC
TTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAAAGGTTCAGTGATATTATGAT
ACCCAACATATAAGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5429#0      ATCTCGATTAAGTTCGCATGATATTTTGTTCGAAGGCTCTTCATTTGAGTTACAGGAATC 60
consensus_5429#1      ------------------------------------------------------------
                                                                                  

consensus_5429#0      TGTTTTTCGAAATGATCGATATGGACTATATTTTGTA-GGTGAAAAAGGTTTCACGTGGA 119
consensus_5429#1      --------------ACCGA-ATGCATCAAACATACTAAGGTTACAAAGATATGTGGTGAT 45
                                    * *** *** *  * *  *  ** *** * **** * *   ***  

consensus_5429#0      AAGGTC-TTCGAGCATACGAAACAC-GCAAAAGACGATTGCTTACCATTTGGTGATCCAG 177
consensus_5429#1      GAGCTTATTTTTATTGACAAATTATAGCAGGAAAACATAATTCAT-GCCTCATAAACCTA 104
                       ** *  **       ** **  *  ***  * *  **   * *     *  * * **  

consensus_5429#0      CTTCAATGCACTTTGGGCCATTTGATTCGTAGCCATTGTAACGT---AGGCATGGTTGGA 234
consensus_5429#1      ATTGGAT---CTTTTGAATAATT-ACCAAGGTTTCTTAGAACATCAGAGACGTACTTGGA 160
                       **  **   **** *   * ** *          **  *** *   ** * *  *****

consensus_5429#0      GGGATTACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAA 294
consensus_5429#1      GGGATTACCAATCCTAATCCTTACAACGGTACCATAAGGCTTGAAAACATCATGAATAAA 220
                      ************************************************************

consensus_5429#0      AGGTTCAGTGATATTATGATACCCAACATATAAGGTAGAGTGTGTCGGTCGG 346
consensus_5429#1      AGGTTCAGTGATATTATGATACCCAACATATAAGGTA--------------- 257
                      *************************************