These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 711 fasta sequence [TTCGAGCTCGGTACCCGATAGTGTTGGTCTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACTTCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATCTGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAAACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAAAGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCACTAAAGCTTGATATATAAGCCAGTATTGATAAAATATCTCCATTGGTGGTAGTCTTTCATCAAAACGTCTACGTAACAGAATTACGATTTCTTCTTGACCAAACTGATAAAAGCCGCTCGATGAGAAACACCAAGTTGATTGCCTCAAACAGCAACTTAATTCAGTTGGATGAACACGAACATGGAGATTTCGAGTGAGAGCTATTGTTATGCCAGGAGACACATGATCTGACTTANGGGAACTTTC] [+] EMBL CD129073 [TTCGAGCTCGGTACCCGATAGTGTTGGTCTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACTTCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATCTGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAAACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAAAGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCACTAAAGCTTGATATATAAGCCAGTATTGATAAAATATCTCCATTGGTGGTAGTCTTTCATCAAAACGTCTACGTAACAGAATTACGATTTCTTCTTGACCAAACTGATAAAAGCCGCTCGATGAGAAACACCAAGTTGATTGCCTCAAACAGCAACTTAATTCAGTTGGATGAACACGAACATGGAGATTTCGAGTGAGAGCTATTGTTATGCCAGGAGACACATGATCTGACTTANGGGAACTTTC] [+] EMBL CD129062 [ ATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACTTCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATCTGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAAACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAAAGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCA ] consensusID : consensus_5458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [TTACATCTTCGATACCATTATTATGTGTAGTAGTATTCGTATCCGATTCACTTTTAACTACATTCAAATGTGCATAGAATCCATTTATATGAAATAATAATTCTGGTAATGGGATACATCTTTGTTTAGGCGTAAATGTCATGAAATCTGGATAGATAAATGGTTTTATATCAGTGAATAATTGTAAGAAGCTTTCTCCATCTAGTTTACAATCAAATAAAATCTTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAG] [-] EMBL CD169509 [TTACATCTTCGATACCATTATTATGTGTAGTAGTATTCGTATCCGATTCACTTTTAACTACATTCAAATGTGCATAGAATCCATTTATATGAAATAATAATTCTGGTAATGGGATACATCTTTGTTTAGGCGTAAATGTCATGAAATCTGGATAGATAAATGGTTTTATATCAGTGAATAATTGTAAGAAGCTTTCTCCATCTAGTTTACAATCAAATAAAATCTTGCGATCACGATCGGATAACAAAGTAGTTGGATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCCAAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGTAGATGTAGACCTAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5458#0 TTCGAGCTCGGTACCCGATAGTGTTGGTCTGCGATCACGATCGGATAACAAAGTAGTTGG 60 consensus_5458#1 ---------------------------------------------TTACATCTTCGATAC 15 * *** * * * consensus_5458#0 -ATAATAATGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTAGATGATATGCCC 119 consensus_5458#1 CATTATTATGTGTAGTAGTATTCGTATCCGATTCACTTTTAACTACATTCAAATGTGCAT 75 ** ** ***** * * * * ** * ** ** ** *** consensus_5458#0 AAGGTGCTTCTTGTATATGCACTAGTAGAGCGATTAAAAACGGTGGATTCGGT--AGATG 177 consensus_5458#1 AGAA---TCCATTTATATGAAATAATAATTCTGGTAATGGGATACATCTTTGTTTAGGCG 132 * * * * ****** * ** ** * *** * ** ** * consensus_5458#0 TAGACCTAATAAACACTGGTGAGTTGGATGGAAAAATACGAATCCATACGGATTGCTACT 237 consensus_5458#1 TAAATGTCATGAAATCTGGATAGATAAATGGTTTTATATCAGTGAATAATTGTAAGAAGC 192 ** * * ** ** **** ** * **** *** * * *** * * consensus_5458#0 TCCATAAATACGACTTGTTAAAGATCTGGAATTAAGCCAACAATAACCATTTGCCATATC 297 consensus_5458#1 TTTCTCCAT----CTAGTTTACAATC-AAATAAAATCTTGCGATCACGATCGG--ATAAC 245 * * ** ** *** * *** * ** * * ** ** ** * *** * consensus_5458#0 TGAGTCAGTACATGGTGAACTAGAACAACGATCGTTTGCAAAGTAAAGTTTTTCAAAGAA 357 consensus_5458#1 AAAGTAGTTGGATAATAA--TGTGACATTTTGCCTAGGTTCAATAAAATTCTACTCGGTA 303 *** * ** * * * *** * * * * **** ** * * * * consensus_5458#0 ACAATCATGTGAACGAAATGGTGCTGAACCGAAGGGTCTATTATACGTTTGAGAGTTGAA 417 consensus_5458#1 G--ATGATATGCCCAAGGTGCTTCTTG--TATATGCACTAGTAGAGCGATTAAAAACGGT 359 ** ** ** * * ** * ** * * *** ** * * * * * consensus_5458#0 AGATTCGAAATTAACATCACTTTTAACTTGTTTCTCGGCATAATTCACTAAAGCTTGATA 477 consensus_5458#1 GGATTCGGTAGATGTAGACCTAATAG---------------------------------- 385 ****** * * ** ** consensus_5458#0 TATAAGCCAGTATTGATAAAATATCTCCATTGGTGGTAGTCTTTCATCAAAACGTCTACG 537 consensus_5458#1 ------------------------------------------------------------ consensus_5458#0 TAACAGAATTACGATTTCTTCTTGACCAAACTGATAAAAGCCGCTCGATGAGAAACACCA 597 consensus_5458#1 ------------------------------------------------------------ consensus_5458#0 AGTTGATTGCCTCAAACAGCAACTTAATTCAGTTGGATGAACACGAACATGGAGATTTCG 657 consensus_5458#1 ------------------------------------------------------------ consensus_5458#0 AGTGAGAGCTATTGTTATGCCAGGAGACACATGATCTGACTTANGGGAACTTTC 711 consensus_5458#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||