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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1028 fasta sequence
[ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAGAAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCCATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATTAGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAGGTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTGTTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTCCACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAGCATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTGTTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACAGTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTATTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAGGACCGTTT]
[+] EMBL CD079411 [ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAGAAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCCATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATTAGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAGGTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTGTTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAA ]
[-] EMBL CD073685 [ TTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTCCACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAGCATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTGTTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACAGTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTATTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAGGACCGTTT]
consensusID : consensus_5510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[GAGATTTGATGCATGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAATTGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAG]
[+] EMBL AI977448 [GAGATTTGATGCATGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAATTGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5510#0 ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAG 60
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 AAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCC 120
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 ATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATT 180
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 AGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAG 240
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 GTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTG 300
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 TTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGG 360
consensus_5510#1 ----------------------------------GAGATTTGATGCAT--GGACAGATGG 24
*** * * * **********
consensus_5510#0 GTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAAT 420
consensus_5510#1 GTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAAT 84
************************************* **********************
consensus_5510#0 TGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAG 480
consensus_5510#1 TGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAG 144
*********** ******************************************* * **
consensus_5510#0 CTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCAT 540
consensus_5510#1 CTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCAT 204
************************************************************
consensus_5510#0 TCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATC 600
consensus_5510#1 TCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATC 264
*************************** ********** *********************
consensus_5510#0 CTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAAC 660
consensus_5510#1 CTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAAC 324
************* * ************* ******************************
consensus_5510#0 TGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTC 720
consensus_5510#1 TGTCATCAG--------------------------------------------------- 333
*********
consensus_5510#0 CACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAG 780
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 CATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTG 840
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 TTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACA 900
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 GTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTA 960
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 TTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAG 1020
consensus_5510#1 ------------------------------------------------------------
consensus_5510#0 GACCGTTT 1028
consensus_5510#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||