These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 919 fasta sequence [GGTTACGAGGAGACTACTTTCAAACAGCATCCTTTAGTACACGAATTTTGGCTTGAATATGCTCATCAACCCTTGAAATGGCACTATCCGATCGGACTTGTATTTGATATGTGTGCAAATACAATGGACATTCCATGGAAGATAACAGTTCATTTTAGTAATTATCCGACTGACTTGCTTTTATCCCCACCGGTAAGTCGACTAGCCGTTGAAACACATTTTCTGTCGATGATTAAAGAAGCTGATGCTTTAAAGCATCGTAGCTACGTTATCAATCAGATGCAAGCTAGAGATCATCGGCAATTATGGAATGGCTTACTACACTTTCGATATGACCAATTTTGGTCGATCAATAGCAAATTAATGGAGCCTCTTCCACAAAATACCAAGGATCTTCCTTTAGAGGAAATGTCTGCCTCTGAAATTCCAGAAAACAAACCATTGTCTTCAAGTCTCGATAATATATCATCTTCAAAGTGAAAAACTTTTCGTTACATTCCATGTCGNCTTTATTGGGGCTCTGAAAATCCAAGTTCTACGCCCATCGGGTTACATTCGAAAACTTATCCGGCCCTTAAAAGATGACAGGTCCGTTAACTTCACTTCAGGATGCTTATGAAATCTTTTCACTAAAAATAAAAACCCGTTTGGAAAAAAACCCAAAAAAAGGGGTTTTTTGTTTTTTATCCCGGGTTTTCATTTTCCCCCAAAAAACCGGGTTATGGGATTGGGAAACCTTTTCCTATTCGCAATTGGGGTTTTTGGTGCCCCCCCAAAACCCTTCTACGGGAAAAAATTAAGACCCTTTAAAGGAAATTTTCAAACATCGGGGTTGTGCTTTAAGGCTTAATATAATATAACCCACAAGGGGTTTGGGGGGGGAACTTTATTTTTTTAAATATAAAAGAAAAATATTTCC] [+] EMBL CD082079 [GGTTACGAGGAGACTACTTTCAAACAGCATCCTTTAGTACACGAATTTTGGCTTGAATATGCTCATCAACCCTTGAAATGGCACTATCCGATCGGACTTGTATTTGATATGTGTGCAAATACAATGGACATTCCATGGAAGATAACAGTTCATTTTAGTAATTATCCGACTGACTTGCTTTTATCCCCACCGGTAAGTCGACTAGCCGTTGAAACACATTTTCTGTCGATGATTAAAGAAGCTGATGCTTTAAAGCATCGTAGCTACGTTATCAATCAGATGCAAGCTAGAGATCATCGGCAATTATGGAATGGCTTACTACACTTTCGATATGACCAATTTTGGTCGATCAATAGCAAATTAATGGAGCCTCTTCCACAAAATACCAAGGATCTTCCTTTAGAGGAAATGTCTGCCTCTGAAATTCCAGAAAACAAACCATTGTCTTCAAGTCTCGATAATATATCATCTTCAAAGTGAAAAACTTTTCGTTACATTCCATGTCGNCTTTATTGGGGCTCTGAAAATCCAAGTTCTACGCCCATCGGGTTACATTCGAAAACTTATCCGGCCCTTAAAAGATGACAGGTCCGTTAACTTCACTTCAGGATGCTTATGAAATCTTTTCACTAAAAATAAAAACCCGTTTGGAAAAAAACCCAAAAAAAGGGGTTTTTTGTTTTTTATCCCGGGTTTTCATTTTCCCCCAAAAAACCGGGTTATGGGATTGGGAAACCTTTTCCTATTCGCAATTGGGGTTTTTGGTGCCCCCCCAAAACCCTTCTACGGGAAAAAATTAAGACCCTTTAAAGGAAATTTTCAAACATCGGGGTTGTGCTTTAAGGCTTAATATAATATAACCCACAAGGGGTTTGGGGGGGGAACTTTATTTTTTTAAATATAAAAGAAAAATATTTCC] consensusID : consensus_5525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CGATAATATATCATCTTCAAAGTGTAGAACTTTTCGTTACATTCCATGTCGTCTTTATTGTGTCTCTGAGAATCCAAGTTCTACGCCATCTGGTTTCATTCAAAAACTTATTCGCCCTTTAAATGATGACGGTTCGCTTACTTCACTTCAAGATGCTATCGAAATTCTTTTCCATACAAATAAAAATCCGCTTGTACAAAATACCGAACCAAAAGGGTATCTGTTTTTCATCCACGGTATCACATTACCCCACGAAACACCGATGCAATGGATCAGCGAACACTTATCCTATCCTGACAATTGTGCATATTGTTGCACGTCCTCAGAGCCATTCTCATCGGATTAAAATTTATGATCCTTCATAAATGTAAATTTTTCCTAACATTACGGTGTATTGTCTTTCAAGTGCTTTGAATTTAAATTTTACAGTCTCAACGGTGTATGTTACGGGGTTGATAACTTTAGTATCTTTATACAATTATGATATGATGATAATAAATTCTTACCTAATC] [-] EMBL CD075694 [CGATAATATATCATCTTCAAAGTGTAGAACTTTTCGTTACATTCCATGTCGTCTTTATTGTGTCTCTGAGAATCCAAGTTCTACGCCATCTGGTTTCATTCAAAAACTTATTCGCCCTTTAAATGATGACGGTTCGCTTACTTCACTTCAAGATGCTATCGAAATTCTTTTCCATACAAATAAAAATCCGCTTGTACAAAATACCGAACCAAAAGGGTATCTGTTTTTCATCCACGGTATCACATTACCCCACGAAACACCGATGCAATGGATCAGCGAACACTTATCCTATCCTGACAATTGTGCATATTGTTGCACGTCCTCAGAGCCATTCTCATCGGATTAAAATTTATGATCCTTCATAAATGTAAATTTTTCCTAACATTACGGTGTATTGTCTTTCAAGTGCTTTGAATTTAAATTTTACAGTCTCAACGGTGTATGTTACGGGGTTGATAACTTTAGTATCTTTATACAATTATGATATGATGATAATAAATTCTTACCTAATC] consensusID : consensus_5525#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [GCGTCTTTAGAAAATTAATTCCTACACCAAAACTAAAATGAAGTCATACTTCCCTAGATCGCCAAATGTTACAAGTACCTATACATCTTGAAACGAAAGTAGTTGGTTTGGTTAAGGACAATCGGAAATTGTGTATTAATTGGAGTTTTGATGACTCTGGTGCACTCAGTTAAAATGATTCGCAAGTCAATTTTGCGGTTTAACTAGTAGCAAATAAGGTAGCAGATGATTTTAACAATAGTTCATACCATTTCAAGGGTTGATGAGCATATTCAAGCCAAAATTCGTGTACTAAAGGATGCTGTTTGAAAGTATCAATCTGATCGGATTGTGCATATTGCATTTCATGTTCTAATTTGCCCCGAGTCTCAGAAGTCATATCTTTGGATGCAGTCTTGAGT] [+] EMBL CD197645 [GCGTCTTTAGAAAATTAATTCCTACACCAAAACTAAAATGAAGTCATACTTCCCTAGATCGCCAAATGTTACAAGTACCTATACATCTTGAAACGAAAGTAGTTGGTTTGGTTAAGGACAATCGGAAATTGTGTATTAATTGGAGTTTTGATGACTCTGGTGCACTCAGTTAAAATGATTCGCAAGTCAATTTTGCGGTTTAACTAGTAGCAAATAAGGTAGCAGATGATTTTAACAATAGTTCATACCATTTCAAGGGTTGATGAGCATATTCAAGCCAAAATTCGTGTACTAAAGGATGCTGTTTGAAAGTATCAATCTGATCGGATTGTGCATATTGCATTTCATGTTCTAATTTGCCCCGAGTCTCAGAAGTCATATCTTTGGATGCAGTCTTGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5525#0 GGTTACGAGGAGACTACTTTCAAACAGCATCCTTTAGTACACGAATTTTGGCTTGAATAT 60 consensus_5525#1 ------------------------------------------------------------ consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 GCTCATCAACCCTTGAAATGGCACTATCCGATCGGACTTGTATTTGATATGTGTGCAAAT 120 consensus_5525#1 ------------------------------------------------------------ consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 ACAATGGACATTCCATGGAAGATAACAGTTCATTTTAGTAATTATCCGACTGACTTGCTT 180 consensus_5525#1 ------------------------------------------------------------ consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 TTATCCCCACCGGTAAGTCGACTAGCCGTTGAAACACATTTTCTGTCGATGATTAAAGAA 240 consensus_5525#1 ------------------------------------------------------------ consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 GCTGATGCTTTAAAGCATCGTAGCTACGTTATCAATCAGATGCAAGCTAGAGATCATCGG 300 consensus_5525#1 ------------------------------------------------------------ consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 CAATTATGGAATGGCTTACTACACTTTCGATATGACCAATTTTGGTCGATCAATAGCAAA 360 consensus_5525#1 ------------------------------------------------------------ consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 TTAATGGAGCCTCTTCCACAAAATACCAAGGATCTTCCTTTAGAGGAAATGTCTGCCTCT 420 consensus_5525#1 ------------------------------------------------------------ consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 GAAATTCCAGAAAACAAACCATTGTCTTCAAGTCTCGATAATATATCATCTTCAAAGTGA 480 consensus_5525#1 -----------------------------------CGATAATATATCATCTTCAAAGTGT 25 consensus_5525#2 ------------------------------------------------------------ consensus_5525#0 AAAACTTTTCGTTACATTCCATGTCGNCTTTATTGGGGCTCTGAAAATCCAAGTTCTACG 540 consensus_5525#1 AGAACTTTTCGTTACATTCCATGTCGTCTTTATTGTGTCTCTGAGAATCCAAGTTCTACG 85 consensus_5525#2 ---GCGTCTTTAGAAAATTAATTCCTACACCAAAACTAAAATGAAGTCATACTTCCCTAG 57 * * * * * * ** * * * *** * * * * consensus_5525#0 CCCATCGGGTTACATTCGAAAACTTATCCGGCCCTTAAAAGATGACAGGTCCGTTAACTT 600 consensus_5525#1 CC-ATCTGGTTTCATTCAAAAACTTATTCGCCCTTTAAATGATGAC-GGTTCGCTTACTT 143 consensus_5525#2 ATCGCCAAATGTTA--CAAGTACCTATACA-TCTTGAAACGAAAGTAG------TTGGTT 108 * * * * * ** *** * * * *** ** * * ** consensus_5525#0 CACTTCAGGATGCTTATGAAAT-CTTTTCACTAAAAATAAAAACCCGTTTGGAAAAAAAC 659 consensus_5525#1 CACTTCAAGATGCTATCGAAATTCTTTTCCATACAAATAAAAATCCGCTTGTACAAAATA 203 consensus_5525#2 TGGTTAAGGACAATCGGAAATTGTGTATTAATTGGAGTTTTGATGACTCTGGTGCA---- 164 ** * ** * ** * * * * * * * ** * consensus_5525#0 CCAAAAAAAGGGGTTTTTTGTTTTTTATCCCGGGTTTT-CATTTTCCCCCAAAAAACCGG 718 consensus_5525#1 CCGAACCAAAAGGGTATCTGTTTTTCATCCACGGTATCACATTACCCCACGAAACACCGA 263 consensus_5525#2 CTCAGTTAAAATGATTCGCAAGTCAATTTTGCGGTTTA--ACTAGTAGCAAATAAGGTAG 222 * * ** * * * * *** * * * * * consensus_5525#0 GTTATGGGATTGGGAAAC-CTTTTCCTATTC--GCAATTGGGGTTTTTGGTGCCC--CCC 773 consensus_5525#1 TGCAATGGATCAGCGAACACTTATCCTATCCTGACAATTGTGCATATTGTTGCACGTCCT 323 consensus_5525#2 CAGATGATTTTAACAATAGTTCATACCATTT---CAAGGG------TTGATGAGCATATT 273 * * * * * * ** *** * *** ** * consensus_5525#0 CAAAACCCTTCT-ACGGGA--AAAAATTAAGACCCTTTAAAGG---AAATTTT--CAAAC 825 consensus_5525#1 CAGAGCCATTCTCATCGGATTAAAATTTATGATCCTTCATAAATGTAAATTTTTCCTAAC 383 consensus_5525#2 CAAGCCAAAATTCGTGTACTAAAGGAT----GCTGTTTGAAAGTATCAATCTGATCGGAT 329 ** * * ** * ** * *** * * * consensus_5525#0 ATCGGGGT----TGTGCTTTAAG-GCTT--AATATAA----TATAACCCACAAGGGGTTT 874 consensus_5525#1 ATTACGGTGTATTGTCTTTCAAGTGCTTTGAATTTAAATTTTACAGTCTCAACGGTGTAT 443 consensus_5525#2 TGTGCATA---TTGCATTTCATG---TTCTAATTTGC----CCCGAGTCTCAGAAGTCAT 379 ** ** * * ** *** * * * consensus_5525#0 G----GGGG--GGGAACTTTATTTTTTT-----AAATATAAAAGAAAAATATTTCC---- 919 consensus_5525#1 GTTACGGGGTTGATAACTTTAGTATCTTTATACAATTATGATATGATGATAATAAATTCT 503 consensus_5525#2 ATCTTTGGAT-GCAGTCTTGAGT------------------------------------- 401 ** * *** * * consensus_5525#0 --------- consensus_5525#1 TACCTAATC 512 consensus_5525#2 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||