These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence [TTTTTTTTTTTTTTTTTTTTAAAAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGGAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTTCACTCATTTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGAACCAATCTACAAACATGAATAAAGACGAGATATATGAGGAGAAATTATTCCATTTTACTAAGGGAACTTTATACGATTTAACGAATGTGT] [+] EMBL AI395845 [TTTTTTTTTTTTTTTTTTTTAAAAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGGA ] [+] EMBL AI394784 [ TTTTTTTTTTTTTTTTAATAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATNAGAGAAAAAGAGAATANAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTTCACTCATTTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGAACCAATCTACAAACATGAATAAAGACGAGATATATGAGGAGAAATTATTCCATTTTACTAAGGGAACTTTATACGATTTAACGAATGTGT] consensusID : consensus_5562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [TTTTTTTTTTTTTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTCACTCAATTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGGAACAATCTACAAACATGAATAAAGACGAGATATATGAGGACGAAATT] [+] EMBL AI395745 [TTTTTTTTTTTTTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTCACTCAATTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGGAACAATCTACAAACATGAATAAAGACGAGATATATGAGGACGAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5562#0 TTTTTTTTTTTTTTTTTTTTAAAAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTT 60 consensus_5562#1 ---------TTTTTTTTTTT-------------TTTTTATATTAAGTTTAAAACTTTTTT 38 *********** *************************** consensus_5562#0 TTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAAT 120 consensus_5562#1 TTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAAT 98 ************************************************************ consensus_5562#0 ACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAA 180 consensus_5562#1 ACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAA 158 ************************************************************ consensus_5562#0 GAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACA 240 consensus_5562#1 GAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACA 218 ************************************************************ consensus_5562#0 TATATATCTATTATATGAGGAACTGCATCGGGAAACATTTTCGACTGTTCATTGATAATA 300 consensus_5562#1 TATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATA 278 ******************************* **************************** consensus_5562#0 CTATTACATGAATTGAAAAGAAAAATGAGTAGAATTTCACTCATTTCCACTAAAACAATG 360 consensus_5562#1 CTATTACATGAATTGAAAAGAAAAATGAGTAGAATT-CACTCAATTCCACTAAAACAATG 337 ************************************ ****** **************** consensus_5562#0 TGATAAGACAATGCATTAAGTTGAACCAATCTACAAACATGAATAAAGACGAGATATATG 420 consensus_5562#1 TGATAAGACAATGCATTAAGTTGGAACAATCTACAAACATGAATAAAGACGAGATATATG 397 *********************** * ********************************** consensus_5562#0 AGGA-GAAATTATTCCATTTTACTAAGGGAACTTTATACGATTTAACGAATGTGT 474 consensus_5562#1 AGGACGAAATT-------------------------------------------- 408 **** ****** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||