cluster # 5575

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Schistosoma mansoni
cluster # 5575 cluster # 5575 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5575#0 length = 453 sequences # 2

consensus_5575#1 length = 418 sequences # 1

consensusID : consensus_5575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 453
fasta sequence

                              [AATTAGGATGCATTTTTTCAACTAATTTTAAAAGTAACTCAAGAGTTGCCATGTCACCATCAAATCGATCACGTAAATCTTCATACTGAACCTTCACTGCAACTTCTTTACCATAATGTGTAACAGCACGGTGTACTTGAGCTAAACTAGCTGCAGCCTATGGTTTATATTCAAAGCTGGCAAACAGTTCAGTAGGTGGCTTGCCAAAATCTTCCATAAATATACGATGTATCTCATCCCCTGAACGTACAAGTGCTTGATCATGCAATTTTTCTAATGTTTCTGTGTACTGAACAGGTAAGACATGGTTCATACTAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATCATAAAGACATCCTTTTAATATTCTGTCCGCAGCTCTCTGATGGCACTTAGCTAGTTCATCAAGATAATGTTCAGAACCCACCGAACGTCATACTACCC]

[+] EMBL CD154919             [AATTAGGATGCATTTTTTCAACTAATTTTAAAAGTAACTCAAGAGTTGCCATGTCACCATCAAATCGATCACGTAAATCTTCATACTGAACCTTCACTGCAACTTCTTTACCATAATGTGTAACAGCACGGTGTACTTGAGCTAAACTAGCTGCAGCCTATGGTTTATATTCAAAGCTGGCAAACAGTTCAGTAGGTGGCTTGCCAAAATCTTCCATAAATATACGATGTATCTCATCCCCTGAACGTACAAGTGCTTGATCATGCAATTTTTCTAATGTTTCTGTGTACTGAACAGGTAAGACATGGTTCATACTAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATCATAAAGACATCCTTTTAATATTCTGTCCGCAGCTCTCTGATGGCACTTAGCTAGTTCATCAAGATAATGTTCAGAACCCACCGAACGTCATACTACC ]
[-] EMBL CD154902             [ ATTAGGATGCATTTTTTCAACTAATTTTAAAAGTAACTCAAGAGTTGCCATGTCACCATCAAATCGATCACGTAAATCTTCATACTGAACCTTCACTGCAACTTCTTCACCATAATGTGTAACAGCACGGTGTACTTGAGCTAAACTAGCTGCAGCCAATGGTTTATATTCAAAGCTGGCAAACAGTTCAGTAGGTGGCTTGCCAAAATCTTCCATAAATATACGATGTATCTCATCCCCTGAACGTACAAGTGCTTGATCATGCAATTTTTCTAATGTTTCTGTGTACTGAACAGGTAAGACATGGTTCATACTAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATTATAAAGACATCCTTTTAATATTCTGTCCGCAGCTCTCCGATGGCACTTAGCTAGTTCATCAAGATAATGTTCAGAACCCACCGAACGTCATACTACCC]




>consensus_5575#0
AATTAGGATGCATTTTTTCAACTAATTTTAAAAGTAACTCAAGAGTTGCCATGTCACCAT
CAAATCGATCACGTAAATCTTCATACTGAACCTTCACTGCAACTTCTTTACCATAATGTG
TAACAGCACGGTGTACTTGAGCTAAACTAGCTGCAGCCTATGGTTTATATTCAAAGCTGG
CAAACAGTTCAGTAGGTGGCTTGCCAAAATCTTCCATAAATATACGATGTATCTCATCCC
CTGAACGTACAAGTGCTTGATCATGCAATTTTTCTAATGTTTCTGTGTACTGAACAGGTA
AGACATGGTTCATACTAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATCATAAA
GACATCCTTTTAATATTCTGTCCGCAGCTCTCTGATGGCACTTAGCTAGTTCATCAAGAT
AATGTTCAGAACCCACCGAACGTCATACTACCC

consensusID : consensus_5575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [TTTTCTAATGTTTCTGTGTACTGAACAGGTAAGACATGGTTCATACTAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATTATAAAGACATCCTTTTAATATTCTGTCCGCAGCTCTCTGATGGCACTTAGCTAGTTCATCAAGATAATGTTCAGAACCTTGCATGTGGGAATATGGTCATAGTCCACTTATAATCCATAGATATAAGGGTTCCAGTATAAACAGCTCTCAAGAACCTTTTCGCTGTCAAAACATGATTGTAGACATTTCGTTCACCCCCATTATGTAAGTAAACATAGTAGACAAAAGAGCTGAATATCGGAACAGAAAATGCCAGTCCGGAATACCTAGCGTGTTTAGTAGTTAGACCTGTCAGGCGAGACCACCTACCACCGAACGTCATACTACCCGGA]

[-] EMBL CD159367             [TTTTCTAATGTTTCTGTGTACTGAACAGGTAAGACATGGTTCATACTAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATTATAAAGACATCCTTTTAATATTCTGTCCGCAGCTCTCTGATGGCACTTAGCTAGTTCATCAAGATAATGTTCAGAACCTTGCATGTGGGAATATGGTCATAGTCCACTTATAATCCATAGATATAAGGGTTCCAGTATAAACAGCTCTCAAGAACCTTTTCGCTGTCAAAACATGATTGTAGACATTTCGTTCACCCCCATTATGTAAGTAAACATAGTAGACAAAAGAGCTGAATATCGGAACAGAAAATGCCAGTCCGGAATACCTAGCGTGTTTAGTAGTTAGACCTGTCAGGCGAGACCACCTACCACCGAACGTCATACTACCCGGA]




>consensus_5575#1
TTTTCTAATGTTTCTGTGTACTGAACAGGTAAGACATGGTTCATACTAGCTAAACCCTGT
CCCATCTTGATATATAAGCCTCCATTATAAAGACATCCTTTTAATATTCTGTCCGCAGCT
CTCTGATGGCACTTAGCTAGTTCATCAAGATAATGTTCAGAACCTTGCATGTGGGAATAT
GGTCATAGTCCACTTATAATCCATAGATATAAGGGTTCCAGTATAAACAGCTCTCAAGAA
CCTTTTCGCTGTCAAAACATGATTGTAGACATTTCGTTCACCCCCATTATGTAAGTAAAC
ATAGTAGACAAAAGAGCTGAATATCGGAACAGAAAATGCCAGTCCGGAATACCTAGCGTG
TTTAGTAGTTAGACCTGTCAGGCGAGACCACCTACCACCGAACGTCATACTACCCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5575#0      AATTAGGATGCATTTTTTCAACTAATTTTAAAAGTAACTCAAGAGTTGCCATGTCACCAT 60
consensus_5575#1      --------------TTTTCTAATGTTTCTGTGTACTGAACAGGTAAGACATGGTTCATAC 46
                                    ***** * *  ** *          ** *     *   **    * 

consensus_5575#0      CAAATCGATCACGTAA-ATCTTCATAC-TGAACCTTCACTGCAACTTCTTTACCATAATG 118
consensus_5575#1      TAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATTATAAAGACATCCTTTTAATA 106
                       *  *  * *  **   ***** ***  * * *** ** *  **   * *     **** 

consensus_5575#0      TGTAACAGCACGGTGTACTTGAGCTAAACTAGCTGCAGCCTATGGTTTATATTCAAAGCT 178
consensus_5575#1      TTCTGTC-CGCAGC-TCTCTGATGGCACTTAGCTAGTTCATCAAGATAATGTTCAGAAC- 163
                      *       * * *  *   ***    *  *****    * *   * * ** **** * * 

consensus_5575#0      GGCAAACAGTTCAGTAGGTGGCTTGCCAAAATCTTCCATAAATATACGATGTATCTCATC 238
consensus_5575#1      --CTTGCATGTGGGAATATGGTC-------ATAGTCCACTTATAATCCATAGATATAAGG 214
                        *   **  *  * *  ***         **  ****   ***  * **  ** * *  

consensus_5575#0      CCCTGAACGTACAAGTGCTTGATCATGCAATTTTTCTAATGTTTCTGTGTACTGAACAGG 298
consensus_5575#1      GTTCCAGTATA-AACAGCTC--TCAAG-AACCTTTTCGCTGTCAAAACATG----ATTGT 266
                           *   ** **  ***   *** * **  ***    ***       *     *  * 

consensus_5575#0      TAAGACATGGTTCATACTAGCTAAACCCTGTCCCATCTTGATATATAAGCCTCCATCATA 358
consensus_5575#1      AGACATTTCGTTCACCCCCATTATGTAAGTAAACATAGTAG-ACAAAAGAGCTGAATATC 325
                        * *  * *****  *    **          ***  *   * * ***     *  ** 

consensus_5575#0      AAGACATCCTTTTAATATTCTGTCCGCAGCTCTCTG-ATGGCACTTAGCTAGTTCATCAA 417
consensus_5575#1      GGAACAGA-----AAATGCCAGTCCGGAATACCTAGCGTGTTTAGTAGTTAGACCTGTCA 380
                         ***       **    * ***** *   *   *  **     *** ***  *    *

consensus_5575#0      GATAATGTTCAGAACCCACCGAACGTCATACTACCC--- 453
consensus_5575#1      GGCGA-GACCACCTACCACCGAACGTCATACTACCCGGA 418
                      *   * *  **    *********************