These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_56#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [CAGACTATCCGTTCAACATAACAAACGAACACAGCATTTGTCATCAAAATTTATTATCATATTCTTCACATGGTGATTCCTGTGGTACAACAGTCAACGCAGTCGCACTTTGCATTCAACTAAATTACATAATCGCATATTGAAGCTGAACCACACATCAATCTACAACGTCAATTCATTATCTCAATTTATTCATATTGTCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTNTGATGCTAACTGTTNTCTGTTTAACTGACTATATGTTTATGTGTTCCTGACACAGTTATTCTGATGCTTATTTGCCCT] [+] EMBL AI976057 [CAGACTATCCGTTCAACATAACAAACGAACACAGCATTTGTCATCAAAATTTATTATCATATTCTTCACATGGTGATTCCTGTGGTACAACAGTCAACGCAGTCGCACTTTGCATTCAACTAAATTACATAATCGCATATTGAAGCTGAACCACACATCAATCTACAACGTCAATTCATTATCTCAATTTATTCATATTGTCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTNTGATGCTAACTGTTNTCTGTTTAACTGACTATATGTTTATGTGTTCCTGACACAGTTATTCTGATGCTTATTTGCCCT] consensusID : consensus_56#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [GCCTCACCCAATCTACACCGTCAATTCATTATCTCAATTTATTCATACTGCCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTTTGATGCTAAAAAAAAAAAAAAAAA] [-] EMBL AI394957 [GCCTCACCCAATCTACACCGTCAATTCATTATCTCAATTTATTCATACTGCCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATATCTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTATTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATTCTAATACAATTTTGATGCTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_56#0 CAGACTATCCGTTCAACATAACAAACGAACACAGCATTTGTCATCAAAATTTATTATCAT 60 consensus_56#1 ------------------------------------------------------------ consensus_56#0 ATTCTTCACATGGTGATTCCTGTGGTACAACAGTCAACGCAGTCGCACTTTGCATTCAAC 120 consensus_56#1 ------------------------------------------------------------ consensus_56#0 TAAATTACATAATCGCATATTGAAGCTGAACCACACATCAATCTACAACGTCAATTCATT 180 consensus_56#1 -----------------------------GCCTCAC-CCAATCTACACCGTCAATTCATT 30 ** *** ********* ************ consensus_56#0 ATCTCAATTTATTCATATTGTCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATAT 240 consensus_56#1 ATCTCAATTTATTCATACTGCCATTCTTCTCCCTTCTGTTTAATTAGTCTTCATCTATAT 90 ***************** ** *************************************** consensus_56#0 CTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTA 300 consensus_56#1 CTATATATACATCATTGTCATTTGTTAAAATTAGTGTGCCTATTACTTGTCGCTTGCCTA 150 ************************************************************ consensus_56#0 TTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATT 360 consensus_56#1 TTGGCTTTAACTATTTCTAACTGTCACTCATGATTATGGAGATAGCATTTTTAAAAAATT 210 ************************************************************ consensus_56#0 CTAATACAATTNTGATGCTAACTGTTNTCTGTTTAACTGACTATATGTTTATGTGTTCCT 420 consensus_56#1 CTAATACAATTTTGATGCTAAAAAAAAAAAAAAAAA------------------------ 246 *********** ********* ** consensus_56#0 GACACAGTTATTCTGATGCTTATTTGCCCT 450 consensus_56#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||