These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence [ATTGTAGGTGATATGAATTCTATTTTGCCGAATTCAAAAGATAATACAATATTAGAAAAGAATACTGATAAAGAGAACAATGAACATACAGATAAATTTGTTCACAATGATGGTGATGATGATACTGAGGATGATTTAATTGAAATTACTGAAGATCCTATGATTAAACTAAATGAAGATTTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAATGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTAACAACAGGATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATCTTTGTATGTACT--TGTGTGTGTTGTCATTTTATATTCTTTTGTAGC-TAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTT] [+] EMBL CD063274 [ATTGTAGGTGATATGAATTCTATTTTGCCGAATTCAAAAGATAATACAATATTAGAAAAGAATACTGATAAAGAGAACAATGAACATACAGATAAATTTGTTCACAATGATGGTGATGATGATACTGAGGATGATTTAATTGAAATTACTGAAGATCCTATGATTAAACTAAATGAAGATTTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAATGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTAACAACAGGATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATCTTTGTATGTACT TGTGTGTGTTGTCATTTTATATTCTTTTGTAGC T ] [-] EMBL CD111824 [ AAGATTTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAATGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTAACAACAGGATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATCTTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGT GCAAAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTT] consensusID : consensus_5604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [ATTAAACAACAGGGATCGTCTTCCATTATCGTGCCGGTTGCTGGCGCCGACGCCAATGATGAGGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATACCATGGATCTTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGTGCAAAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTTGCTCTCCTCTCTCCTAAAGCAGAATCACT] [-] EMBL CD141702 [ATTAAACAACAGGGATCGTCTTCCATTATCGTGCCGGTTGCTGGCGCCGACGCCAATGATGAGGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATACCATGGATCTTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGTGCAAAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTTGCTCTCCTCTCTCCTAAAGCAGAATCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5604#0 ATTGTAGGTGATATGAATTCTATTTTGCCGAATTCAAAAGATAATACAATATTAGAAAAG 60 consensus_5604#1 ------------------------------------------------------------ consensus_5604#0 AATACTGATAAAGAGAACAATGAACATACAGATAAATTTGTTCACAATGATGGTGATGAT 120 consensus_5604#1 ------------------------------------------------------------ consensus_5604#0 GATACTGAGGATGATTTAATTGAAATTACTGAAGATCCTATGATTAAACTAAATGAAGAT 180 consensus_5604#1 ------------------------------------------------------------ consensus_5604#0 TTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAA 240 consensus_5604#1 ------------------------------------------------------------ consensus_5604#0 TGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTA 300 consensus_5604#1 -------------------------------------------------------ATTAA 5 * * * consensus_5604#0 ACAACAGG-ATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGA 359 consensus_5604#1 ACAACAGGGATCGTCTTCCATTATCGTGCCGGTTGCTGGCGCCGACGCCAATGATGAGGA 65 ******** *** ** *********** ********** ** ***** ********* ** consensus_5604#0 TTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATC 419 consensus_5604#1 TTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATA--CCATGGATC 123 ************************************************* ********* consensus_5604#0 TTTGTATGTACTTGTGTGTGT--TGTCATTTTATATTCTTTTGTAGCTAAGTAATCATTT 477 consensus_5604#1 TTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGTGCAAAAGTAATCATTT 183 ********************* ********************* ************ consensus_5604#0 TGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTT------------------------ 513 consensus_5604#1 TGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTTGCTCTCCTCTCTCCTAAAGCAGAA 243 ************************************ consensus_5604#0 ----- consensus_5604#1 TCACT 248 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||