These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 399 fasta sequence [TAATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAAAAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGAAAGAAAAGATTTATACTTTTATTTCTATTGTTATAAAAAATGGCATCCGATTTTNGTTATTAAATTTCTNCATTTAACTTTACCTTATTATTTCTGTCAATTAGTTTTTTTTATNCTTATTTGTTNCTGTGGGTATGTGTATGATGATTGTTTGCTGATTAATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTNTTGTTTGTTTTTTTTTCGCACTTAAATCGACTTATACCTGCAAACNCATACATNA] [+] EMBL AI111015 [TAATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAAAAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGAAAGAAAAGATTTATACTTTTATTTCTATTGTTATAAAAAATGGCATCCGATTTTNGTTATTAAATTTCTNCATTTAACTTTACCTTATTATTTCTGTCAATTAGTTTTTTTTATNCTTATTTGTTNCTGTGGGTATGTGTATGATGATTGTTTGCTGATTAATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTNTTGTTTGTTTTTTTTTCGCACTTAAATCGACTT ] [+] EMBL AI110936 [ AATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAAAAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTNTGAAGAAGAAGAGGAAGAATCGGAAAGAAAAGATTT TCCTTTTATTTCTATTGTNATAAAAAATGGCATCCGATTTTTGTTATTAAATTTCTTCNTTTAACTTTACCTTATTATTTCTGTCAATTAGTTTTTTTTATTCTTATTTGTTTCTGTGGGTNTGTGTATGATGATTGTTTGCTGATTAATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTTTTGTTTGTTTTTTTTTCGCACTTAAATCGACATATACCTGCAAACNCATACATNA] consensusID : consensus_5607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [ACAATAATANCAATGGTATTATTAATNAAAAAAATAGAAAATAATTTTAGGCTGAACAANTACNTTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGATNGAAAAGATTTATNCTTTTATTTCTATTGTTATAAAAAATGGCNTCCGATTTTNGTNATTAANTCCCTCCATTNANCTTTACCTCATTATTTTCTGTCATTTAGTTCTTTTATCCCTATTTGTTTCTGT] [+] EMBL AI110988 [ACAATAATANCAATGGTATTATTAATNAAAAAAATAGAAAATAATTTTAGGCTGAACAANTACNTTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGATNGAAAAGATTTATNCTTTTATTTCTATTGTTATAAAAAATGGCNTCCGATTTTNGTNATTAANTCCCTCCATTNANCTTTACCTCATTATTTTCTGTCATTTAGTTCTTTTATCCCTATTTGTTTCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5607#0 TAATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAA 60 consensus_5607#1 -----------------------------ACAATAATANCAATGGTATTATTAATNAAAA 31 ********* **************** **** consensus_5607#0 AAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTATGAAGA 120 consensus_5607#1 AAATAGAAAATAATTTTAGGCTGAACAANTACNTTTGAGTTTAATGTGGAATTATGAAGA 91 **************************** *** *************************** consensus_5607#0 AGAAGAGGAAGAATAGGAAAGAAAAGATTTATACTTTTATTTCTATTGTTATAAAAAATG 180 consensus_5607#1 AGAAGAGGAAGAATAGGATNGAAAAGATTTATNCTTTTATTTCTATTGTTATAAAAAATG 151 ****************** ************ *************************** consensus_5607#0 GCATCCGATTTTNGTTATTAAATTTCTNCATTTAACTTTACCTTATTATTT-CTGTCAAT 239 consensus_5607#1 GCNTCCGATTTTNGTNATTAANTCCCTCCATTNANCTTTACCTCATTATTTTCTGTCATT 211 ** ************ ***** * ** **** * ******** ******* ****** * consensus_5607#0 TAGTTTTTTTTATNCTTATTTGTTNCTGTGGGTATGTGTATGATGATTGTTTGCTGATTA 299 consensus_5607#1 TAGTTCTTTT-ATCCCTATTTGTTTCTGT------------------------------- 239 ***** **** ** * ******** **** consensus_5607#0 ATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTNTTGTTTGTTTTTTTT 359 consensus_5607#1 ------------------------------------------------------------ consensus_5607#0 TCGCACTTAAATCGACTTATACCTGCAAACNCATACATNA 399 consensus_5607#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||