These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2131 fasta sequence [TTACCTTTCCTCTGTCACTAGAAATTTCAAGTATCTAAGTAAAAATTTTAATCAACACTAATGACGCGATCAGAAACAAAACTGCCGACAGTTGATCGCATTGTCACAAGTGTACCTTCTCCTCCGAGCAAATTAATGCCTTCAAGTACGGTGTTCGATTCTAAGGGTCGTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGAGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGTTGGATCGATTTAAAGAACCACCGGCATTTGGTGCAATGTGTGATTTATTATGGGCTGATCCATGTGAAGATTTTGGTCAAGAAAGAAATTCAGAACATTTCAGTCATAATACAGTCCGTGGATGCTCATATTTCTACAGCTTTAATGCATGTTGTCATTTTTTACAAGCTAATAATTTACTGTCTATTATACGAGCCCATGAAGCACAAGATGCCGGTTATCGAATGTACAGAAAAAGTCGACAAACTGGATTTCCTGCTTTAATTACTATTTTCTCAGCACCCAATTATTTAGATGTGTATAATAATAAAGCCGCTATATTAAAATATGAAAATAATGTAATGCTAATACGTCAGTTTAACTGTTCACCACATCCATATTGGTTGCGGAATTTCATGGATGTATTTACTTGGTCATTACCATTTGTTGGTGAAAAAGTTACCGAAATGTTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAAGATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGTAAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAAGGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATCAAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCAATGTTTTGAAGAAGCGAAAGCATTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGGCCATATTCTTCCACAACATCAATTAATACAAATGATGAACAAGAAAATAAATTGTCTGATTCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACACCCAGCTCACAAAAACCAGTGCCAAGACCACCATCGATTTGTGAAGAACACTCATCTGATGACGATAATGTTGGTGATGATGATACTGAAGCCAAAAATGATAGAAGAAAGCTCAAACAACAAATCAATACTGCTAATGATCTCAGATCAGCAAAATTAACTGATCAACTTGATATAACCAACACATCGAGTGATCCCTACCAGTCGACTAGTTCTGCTGATTCAACAAAATCAAATAAAAATGATTTAACCAATACTACTAAAACTCCTAGTACTACTACTTCTACTATTAGTAGTAGTAGTAGTTCAACATTACAAAACAGAACAATTATAAGGACAATAACACCTAATAAATCAAAAAAGGACAACCTATAATCATCAATGCTTCCGTAGGGACATTCAATCTATCCACGTCCACTATGACTAATTCTGAAAATTTATATTTTACAACTAACTAACCAACTAATCAAACAGATATATAATCTATAATATACGTATATTTAGATACTCG] [+] EMBL SMA276884 [TTACCTTTCCTCTGTCACTAGAAATTTCAAGTATCTAAGTAAAAATTTTAATCAACACTAATGACGCGATCAGAAACAAAACTGCCGACAGTTGATCGCATTGTCACAAGTGTACCTTCTCCTCCGAGCAAATTAATGCCTTCAAGTACGGTGTTCGATTCTAAGGGTCGTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGAGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGTTGGATCGATTTAAAGAACCACCGGCATTTGGTGCAATGTGTGATTTATTATGGGCTGATCCATGTGAAGATTTTGGTCAAGAAAGAAATTCAGAACATTTCAGTCATAATACAGTCCGTGGATGCTCATATTTCTACAGCTTTAATGCATGTTGTCATTTTTTACAAGCTAATAATTTACTGTCTATTATACGAGCCCATGAAGCACAAGATGCCGGTTATCGAATGTACAGAAAAAGTCGACAAACTGGATTTCCTGCTTTAATTACTATTTTCTCAGCACCCAATTATTTAGATGTGTATAATAATAAAGCCGCTATATTAAAATATGAAAATAATGTAATGCTAATACGTCAGTTTAACTGTTCACCACATCCATATTGGTTGCGGAATTTCATGGATGTATTTACTTGGTCATTACCATTTGTTGGTGAAAAAGTTACCGAAATGTTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAAGATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGTAAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAAGGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATCAAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCAATGTTTTGAAGAAGCGAAAGCATTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGGCCATATTCTTCCACAACATCAATTAATACAAATGATGAACAAGAAAATAAATTGTCTGATTCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACACCCAGCTCACAAAAACCAGTGCCAAGACCACCATCGATTTGTGAAGAACACTCATCTGATGACGATAATGTTGGTGATGATGATACTGAAGCCAAAAATGATAGAAGAAAGCTCAAACAACAAATCAATACTGCTAATGATCTCAGATCAGCAAAATTAACTGATCAACTTGATATAACCAACACATCGAGTGATCCCTACCAGTCGACTAGTTCTGCTGATTCAACAAAATCAAATAAAAATGATTTAACCAATACTACTAAAACTCCTAGTACTACTACTTCTACTATTAGTAGTAGTAGTAGTTCAACATTACAAAACAGAACAATTATAAGGACAATAACACCTAATAAATCAAAAAAGGACAACCTATAATCATCAATGCTTCCGTAGGGACATTCAATCTATCCACGTCCACTATGACTAATTCTGAAAATTTATATTTTACAACTAACTAACCAACTAATCAAACAGATATATAATCTATAATATACGTATATTTAGATACTCG] [+] EMBL CD063681 [ TTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAAGATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGTAAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAAGGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATCAAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCGATGTTTTGAAGAAGCGAAAGCATTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGGCCATATTCTTCCACAACATCGATTAATACAAATGATGAACAAGAAAATAAATTGTCTGATTCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACACCCAGCTCACAAAAACCAGTGCCAAGAACACCAT ] consensusID : consensus_5675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [GTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGTGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGGAAATGGGTTTTTTTA] [+] EMBL CD184308 [GTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGTGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGGAAATGGGTTTTTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5675#0 TTACCTTTCCTCTGTCACTAGAAATTTCAAGTATCTAAGTAAAAATTTTAATCAACACTA 60 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 ATGACGCGATCAGAAACAAAACTGCCGACAGTTGATCGCATTGTCACAAGTGTACCTTCT 120 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 CCTCCGAGCAAATTAATGCCTTCAAGTACGGTGTTCGATTCTAAGGGTCGTCCTCAATTA 180 consensus_5675#1 -------------------------------------------------GTCCTCAATTA 11 *********** consensus_5675#0 GATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGA 240 consensus_5675#1 GATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGA 71 ************************************************************ consensus_5675#0 ATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCT 300 consensus_5675#1 ATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCT 131 ************************************************************ consensus_5675#0 CCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAA 360 consensus_5675#1 CCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAA 191 ************************************************************ consensus_5675#0 GTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGT 420 consensus_5675#1 GTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGT 251 ************************************************************ consensus_5675#0 TATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGT 480 consensus_5675#1 TATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGT 311 ************************************************************ consensus_5675#0 CTGTTTCTTCTACGAGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGA 540 consensus_5675#1 CTGTTTCTTCTACGTGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGA 371 ************** ********************************************* consensus_5675#0 CAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGAT 600 consensus_5675#1 CAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGAT 431 ************************************************************ consensus_5675#0 CTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCA 660 consensus_5675#1 CTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCA 491 ************************************************************ consensus_5675#0 CCTGAATTGCATACATTAAATGATATACGTAAGTTGGATCGATTTAAAGAACCACCGGCA 720 consensus_5675#1 CCTGAATTGCATACATTAAATGATATACGTAAGG-AAATGGGTTTTTTTA---------- 540 ********************************* ** * *** * consensus_5675#0 TTTGGTGCAATGTGTGATTTATTATGGGCTGATCCATGTGAAGATTTTGGTCAAGAAAGA 780 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AATTCAGAACATTTCAGTCATAATACAGTCCGTGGATGCTCATATTTCTACAGCTTTAAT 840 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 GCATGTTGTCATTTTTTACAAGCTAATAATTTACTGTCTATTATACGAGCCCATGAAGCA 900 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 CAAGATGCCGGTTATCGAATGTACAGAAAAAGTCGACAAACTGGATTTCCTGCTTTAATT 960 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 ACTATTTTCTCAGCACCCAATTATTTAGATGTGTATAATAATAAAGCCGCTATATTAAAA 1020 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 TATGAAAATAATGTAATGCTAATACGTCAGTTTAACTGTTCACCACATCCATATTGGTTG 1080 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 CGGAATTTCATGGATGTATTTACTTGGTCATTACCATTTGTTGGTGAAAAAGTTACCGAA 1140 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 ATGTTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAA 1200 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 GATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGT 1260 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAA 1320 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 GGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATC 1380 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCAATGTTTTGAAGAAGCGAAAGCA 1440 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 TTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGG 1500 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 CCATATTCTTCCACAACATCAATTAATACAAATGATGAACAAGAAAATAAATTGTCTGAT 1560 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 TCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACA 1620 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 CCCAGCTCACAAAAACCAGTGCCAAGACCACCATCGATTTGTGAAGAACACTCATCTGAT 1680 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 GACGATAATGTTGGTGATGATGATACTGAAGCCAAAAATGATAGAAGAAAGCTCAAACAA 1740 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 CAAATCAATACTGCTAATGATCTCAGATCAGCAAAATTAACTGATCAACTTGATATAACC 1800 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AACACATCGAGTGATCCCTACCAGTCGACTAGTTCTGCTGATTCAACAAAATCAAATAAA 1860 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AATGATTTAACCAATACTACTAAAACTCCTAGTACTACTACTTCTACTATTAGTAGTAGT 1920 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AGTAGTTCAACATTACAAAACAGAACAATTATAAGGACAATAACACCTAATAAATCAAAA 1980 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AAGGACAACCTATAATCATCAATGCTTCCGTAGGGACATTCAATCTATCCACGTCCACTA 2040 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 TGACTAATTCTGAAAATTTATATTTTACAACTAACTAACCAACTAATCAAACAGATATAT 2100 consensus_5675#1 ------------------------------------------------------------ consensus_5675#0 AATCTATAATATACGTATATTTAGATACTCG 2131 consensus_5675#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||