These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 797 fasta sequence [CGGGCCTTTAATTCGGCACGCAGGTGGAACCTTATACGCTCGATC-ACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTGTTGCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGGATGACCTACCACTTTTGGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTCATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAATAACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAAAGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATGCTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGGATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTGTATTCATCAGTAATTGTTTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCCAACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAACAAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAGTGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGATGTTAGTCTTTGAAGTTCAATAAACGAT] [+] EMBL CD081782 [CGGGCCTTTAATTCGGCACGCAGGTGGAACCTTATACGCTCGATC ACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTGTTGCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGGATGACCTACCACTTTTGGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTCATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAATAACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAAAGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATGCTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGGATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTGTATTCATCAGTAATTGTTTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCCAACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAACAAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAGTGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGATGTTAGTCTTTGAAGTTCAATAAACGAT] [-] EMBL CD075513 [ GGAACCTTATACGCTCGATCAACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTGTTGCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGGATGACCTACCACTTTTGGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTCATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAATAACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAAAGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATGCTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGGATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTGTATTCATCAGTAATTGTTTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCCAACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAACAAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAGTGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGATGTTAGTCTTTGAAGGTCAATAACCGAT] consensusID : consensus_5719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [TCGTACCTAAACTGAACGTCCTAGGAAGAGCGCCACCTTAAAATACTGTGCGCATTGAGTCAAAATAAATGTCAGTTGATTATGCATCTAAGCTGTCCTACTATCCCAACAAAGGAGTTTGTGGTTTACCTGAAGTTCTCGATGATGATTCTCAATTAGATTTGAAACTCACTGAGCTTGCTAATTTGGTACGTCAATCCACCTACATAGTTGTGCATACTGGAGCTGGTATTAGCGCATCAGTGGGTATACCGGACTTTCGAGGTCCTCGTGGTGTCTGGACGTTGGAAAAAGTTGGAAAAAAATCTAAACTTTCCGTACCTTTTGAAAAAGTGGTTCCATCACTAACACATCGAGCTCTTGTTGAATTGGAAAAACACGATGTTGTCAAATTCTTGGTAACTCAAAATATCGATGGGTTGCACTTAAGATCTGGCTTTCCAAGAGACCGTTTGGCTATTCTTCATGGTGATATGTTTCTTAATACATGTAGTGCTTGTGGAACCTTATACGCTCGATCAACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAA] [+] EMBL CD185300 [TCGTACCTAAACTGAACGTCCTAGGAAGAGCGCCACCTTAAAATACTGTGCGCATTGAGTCAAAATAAATGTCAGTTGATTATGCATCTAAGCTGTCCTACTATCCCAACAAAGGAGTTTGTGGTTTACCTGAAGTTCTCGATGATGATTCTCAATTAGATTTGAAACTCACTGAGCTTGCTAATTTGGTACGTCAATCCACCTACATAGTTGTGCATACTGGAGCTGGTATTAGCGCATCAGTGGGTATACCGGACTTTCGAGGTCCTCGTGGTGTCTGGACGTTGGAAAAAGTTGGAAAAAAATCTAAACTTTCCGTACCTTTTGAAAAAGTGGTTCCATCACTAACACATCGAGCTCTTGTTGAATTGGAAAAACACGATGTTGTCAAATTCTTGGTAACTCAAAATATCGATGGGTTGCACTTAAGATCTGGCTTTCCAAGAGACCGTTTGGCTATTCTTCATGGTGATATGTTTCTTAATACATGTAGTGCTTGTGGAACCTTATACGCTCGATCAACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5719#0 CGGGCCTTTAATTCGGCACGCAGGTGGAACCTTATACGCTCGATCACACCTTC-AGGATC 59 consensus_5719#1 -------------------------------TCGTAC-CTAAACTGAACGTCCTAGGAAG 28 * *** ** * ** * * **** consensus_5719#0 AGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTG-TT 118 consensus_5719#1 AGCG---CCACCTTAA--AATA-CTGTGCGCATTGAGTCAAAATA-AATGTCAGTTGATT 81 ** * ** * ** * * *** *** * * *** * *** * ** ** consensus_5719#0 GCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGG--ATGACCTACC---ACTTTT 173 consensus_5719#1 ATGCATCTAAGCT--GTCCTACTATCCCAACAAAGGAGTTTGTGGTTTACCTGAAGTTCT 139 * ***** ** ****** * **** ** **** * ** * consensus_5719#0 GGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTC 233 consensus_5719#1 CGATGATGATTCT-CAATTAGA--TTTGAAACTCACTGAGCTTGCTA-AT---TTGGTAC 192 *** ** ** * ** * * ** *** * ** *** ** ** **** * consensus_5719#0 ATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAA 293 consensus_5719#1 GTCAATCCA-----CCTACATAGTTGTGCATACTGGAGCTGGTATTAGCGCATCAGTGGG 247 *** * ** * * * * ** * * ** * * ** consensus_5719#0 TA-ACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAA 352 consensus_5719#1 TATACCGGACTTTCGA-GGTCCTCGTGGTGTCTGGA-CGTTGGAAAAAGTTGGA----AA 301 ** ** *** * * * ** * * * * * * * **** * ** ** consensus_5719#0 AGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATG 412 consensus_5719#1 AAAATCTAAACTTTCCG-TACCTTTTGAAAAAGTGGTTCCATCACTAACACATCGA---G 357 * ***** *** ** ** ** * *** ** ** ** * * consensus_5719#0 CTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGG 472 consensus_5719#1 CTCTTGTTGAATTGGAAAAACACGATGTTGTCAAATTCTTGGTAAC---TCAAAATATCG 414 ** * * * * * ** ** ** ** * * *** * **** * * consensus_5719#0 ATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTG--TATTCATCAGTAATTGT 530 consensus_5719#1 ATGGGTTGCACTTAAGATCTGGCTTTCCAAGAGACCGTTTGGCTATTCTTCA-TGGTGAT 473 ** **** * * * * * *** ***** ***** *** * * * consensus_5719#0 TTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCC 590 consensus_5719#1 ATGTTTCTTAATACATGTAGTGCTTGTGGAACCTTATACGCTCGATCAACACCTTCAG-- 531 * * ****** * ***** * * * * * ** *** consensus_5719#0 AACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAAC 650 consensus_5719#1 GATCAGTGGGTTTACGTCAATCATCAGTTGTAT--GCACCTATTTGAA------------ 577 * ** * *** **** * * * * * * * * consensus_5719#0 AAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAG 710 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 TGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGAT 770 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GTTAGTCTTTGAAGTTCAATAAACGAT 797 consensus_5719#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||