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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5721 cluster # 5721       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5721#0 length = 785 sequences # 2  
consensus_5721#1 length = 338 sequences # 1  

consensusID : consensus_5721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 785
fasta sequence
                              [TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCTTTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAAATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATCATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATACCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACTGATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACCAGATC]

[+] EMBL CD128170             [TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCTTTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAAATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATCATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATACCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACTGATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCG                                                                                                                                                                                                                                                                       ]
[-] EMBL CD159576             [                                                                                                                                                                                                                                                                                                                                                                                                                   CAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGTTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACCAGATC]


>consensus_5721#0 TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCT TTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAA ATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATC ATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATA CCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA TTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACT GATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGT AAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTA ACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGC TTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATA CATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTA TCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATT TTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACC AGATC



consensusID : consensus_5721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence
                              [TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA]

[+] EMBL CD159602             [TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA]


>consensus_5721#1 TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAA GTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGA GTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAG GCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGAT TGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCT ATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5721#0      TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCT 60
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      TTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAA 120
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      ATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATC 180
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      ATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATA 240
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      CCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA 300
consensus_5721#1      -----------TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA 49
                                 *************************************************

consensus_5721#0      TTTACAA-GAAGTTTTAAA-AATCCC-CTTTCGAAACAATTACATAT-TGGTGATCTAAG 356
consensus_5721#1      TTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAG 109
                      ******* *********** ****** ******************** ************

consensus_5721#0      -TACTG-ATGAGTTT-GGTAC-TGCTGAAAAAGA---TCTGCCA-TTTAC-AAACTCAG- 406
consensus_5721#1      ATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGA 169
                       ***** ******** ***** ****  **** *   ******* ***** ******** 

consensus_5721#0      GATCTC-TCGGGC-GTAAA-AGAACTG-CACCGC-GACCA-CCAAGACGTACTACACCA- 459
consensus_5721#1      GATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCAC 229
                      ****** ** *** ***** ******* ****** ***** ****************** 

consensus_5721#0      GTTAAACCGGT-GAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTG 518
consensus_5721#1      GTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTG 289
                      ********* * ********************************** ********** **

consensus_5721#0      CCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCT 578
consensus_5721#1      CCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA----------- 338
                      ******************** ****************************           

consensus_5721#0      TGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACC 638
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      ACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATC 698
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      AGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCAT 758
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      TCCATTAGATAACAGCCTGACCAGATC 785
consensus_5721#1      ---------------------------
                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)