These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence [TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCTTTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAAATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATCATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATACCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACTGATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACCAGATC] [+] EMBL CD128170 [TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCTTTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAAATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATCATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATACCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACTGATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCG ] [-] EMBL CD159576 [ CAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGTTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACCAGATC] consensusID : consensus_5721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA] [+] EMBL CD159602 [TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5721#0 TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCT 60 consensus_5721#1 ------------------------------------------------------------ consensus_5721#0 TTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAA 120 consensus_5721#1 ------------------------------------------------------------ consensus_5721#0 ATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATC 180 consensus_5721#1 ------------------------------------------------------------ consensus_5721#0 ATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATA 240 consensus_5721#1 ------------------------------------------------------------ consensus_5721#0 CCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA 300 consensus_5721#1 -----------TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA 49 ************************************************* consensus_5721#0 TTTACAA-GAAGTTTTAAA-AATCCC-CTTTCGAAACAATTACATAT-TGGTGATCTAAG 356 consensus_5721#1 TTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAG 109 ******* *********** ****** ******************** ************ consensus_5721#0 -TACTG-ATGAGTTT-GGTAC-TGCTGAAAAAGA---TCTGCCA-TTTAC-AAACTCAG- 406 consensus_5721#1 ATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGA 169 ***** ******** ***** **** **** * ******* ***** ******** consensus_5721#0 GATCTC-TCGGGC-GTAAA-AGAACTG-CACCGC-GACCA-CCAAGACGTACTACACCA- 459 consensus_5721#1 GATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCAC 229 ****** ** *** ***** ******* ****** ***** ****************** consensus_5721#0 GTTAAACCGGT-GAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTG 518 consensus_5721#1 GTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTG 289 ********* * ********************************** ********** ** consensus_5721#0 CCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCT 578 consensus_5721#1 CCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA----------- 338 ******************** **************************** consensus_5721#0 TGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACC 638 consensus_5721#1 ------------------------------------------------------------ consensus_5721#0 ACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATC 698 consensus_5721#1 ------------------------------------------------------------ consensus_5721#0 AGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCAT 758 consensus_5721#1 ------------------------------------------------------------ consensus_5721#0 TCCATTAGATAACAGCCTGACCAGATC 785 consensus_5721#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||