These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [CTCCAGGAGCACCTGCAGCACCAGACGCACCACCACCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCACGTGCTCGTAGTCCTCACGCTCCAACACATCCAAGAAAATACCAACGTCCACCACAAGATGGTAGAAAATCGGTGCAAATTCTGAGGTGAACGCAGCCAGTGTGTTCATCA] [+] EMBL CD141643 [CTCCAGGAGCACCTGCAGCACCAGACGCACCACCACCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCACGTGCTCGTAGTCCTCACGCTCCAACACATCCAAGAAAATACCAACGTCCACCACAAGATGGTAGAAAATCGGTGCAAATTCTGAGGTGAACGCAGCCAGTGTGTTCATCA] consensusID : consensus_5730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 149 fasta sequence [GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCA] [-] EMBL CD136308 [GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCA] [-] EMBL CD136298 [GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACACCGGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCATCCAGATCACCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5730#0 ------CTCCAGGAG---CACCTGCAGCACCAGACGCACCACCACCAGCTTCAGCAACAC 51 consensus_5730#1 GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACAC 60 **** * * *** *** * ** *** * **************** consensus_5730#0 CAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAA 111 consensus_5730#1 CAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAA 120 ************************************************************ consensus_5730#0 GAACAGCCCACCCACCCAGATCACCACCACGTGCTCGTAGTCCTCACGCTCCAACACATC 171 consensus_5730#1 GAACAGCCCACCCACCCAGATCACCACCA------------------------------- 149 ***************************** consensus_5730#0 CAAGAAAATACCAACGTCCACCACAAGATGGTAGAAAATCGGTGCAAATTCTGAGGTGAA 231 consensus_5730#1 ------------------------------------------------------------ consensus_5730#0 CGCAGCCAGTGTGTTCATCA 251 consensus_5730#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||