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Schistosoma mansoni
cluster # 5756 cluster # 5756       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5756#0 length = 933 sequences # 2  
consensus_5756#1 length = 505 sequences # 1  

consensusID : consensus_5756#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 933
fasta sequence
                              [CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGAATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTG--TTNTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCTGAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGACTATTTCAGATGCAGCAATACCTAATTTCCTTTTCTNACACACCGTACTTGTAACTGCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANTATGGNTCAGATACTAAAGGGGTTTCGTGAGCTGTCGGCATT]

[+] EMBL CD083230             [CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGAATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTG  TTNT                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD080104             [                                                                   GGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAG TTNGTTGGNTTNTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCTGAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGACTATTTCAGATGCAGCAATACCTAATTTCCTTTTCTNACACACCGTACTTGTAACTGCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANTATGGNTCAGATACTAAAGGGGTTTCGTGAGCTGTCGGCATT]


>consensus_5756#0 CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGA ATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACT TTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTA GACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATA CTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATA AACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGA ATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCA CTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTT CTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGC ATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGA TAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTGTTNTGAAGT TCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCT GAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTAC CCTTGACTATTTCAGATGCAGCAATACCTAATTTCCTTTTCTNACACACCGTACTTGTAA CTGCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANTATGGNTCA GATACTAAAGGGGTTTCGTGAGCTGTCGGCATT



consensusID : consensus_5756#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [TCAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTTGAGGTGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAACTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTTACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCGTGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCCGATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTAAATAAACGACGCA]

[-] EMBL CD076801             [TCAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTTGAGGTGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAACTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTTACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCGTGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCCGATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTAAATAAACGACGCA]


>consensus_5756#1 TCAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTG TTGGTTTTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAA CTCGTAGCAATTTGAGGTGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCA CTTTTTATGTACCCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTC ACACAACCGTAACTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTAT GCTTTTATTTTTACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTT GATGCTGTTTCGTGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAA TTATCGTTTCCCGATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTT TTTTTTGGATTAAATAAACGACGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5756#0      CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGA 60
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      ATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACT 120
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      TTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTA 180
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      GACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATA 240
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      CTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATA 300
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      AACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGA 360
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      ATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCA 420
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      CTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTT 480
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      CTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGC 540
consensus_5756#1      ------------------------------------------------------------
                                                                                  

consensus_5756#0      ATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGA 600
consensus_5756#1      -----------------------------------------------TCAACAGAGTAGA 13
                                                                      ************

consensus_5756#0      TAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTGTTNTGAAGT 660
consensus_5756#1      TAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGT 73
                      ******************************************* *** * *** ******

consensus_5756#0      TCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCT 720
consensus_5756#1      TCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTT 133
                      ********************************************************** *

consensus_5756#0      GAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTAC 780
consensus_5756#1      GAGG-TGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTAC 192
                      **** ********************* *********************************

consensus_5756#0      CCTTGA-CTATTTCAGATG-CAGCAA-TACCTAATTTCCTTTTCTNACACAC---CGTA- 833
consensus_5756#1      CCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAA 252
                      ****** ************ ****** ********** * *** *  *****   **** 

consensus_5756#0      CTTGTAACT-GCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANT 892
consensus_5756#1      CTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTT 312
                      ********* ****** **   **    *  * * *  * * *  ***    * ***  *

consensus_5756#0      A-TGGNTCAGATACTAAA---GGGGTTTCGTGAGCTGTCGGCATT--------------- 933
consensus_5756#1      ACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCG 372
                      * *   * *  ** *        * ** *** *  ***     *                

consensus_5756#0      ------------------------------------------------------------
consensus_5756#1      TGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCC 432
                                                                                  

consensus_5756#0      ------------------------------------------------------------
consensus_5756#1      GATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTA 492
                                                                                  

consensus_5756#0      -------------
consensus_5756#1      AATAAACGACGCA 505
                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)