These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence [CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGAATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTG--TTNTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCTGAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGACTATTTCAGATGCAGCAATACCTAATTTCCTTTTCTNACACACCGTACTTGTAACTGCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANTATGGNTCAGATACTAAAGGGGTTTCGTGAGCTGTCGGCATT] [+] EMBL CD083230 [CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGAATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTG TTNT ] [+] EMBL CD080104 [ GGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAG TTNGTTGGNTTNTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCTGAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGACTATTTCAGATGCAGCAATACCTAATTTCCTTTTCTNACACACCGTACTTGTAACTGCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANTATGGNTCAGATACTAAAGGGGTTTCGTGAGCTGTCGGCATT] consensusID : consensus_5756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [TCAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTTGAGGTGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAACTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTTACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCGTGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCCGATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTAAATAAACGACGCA] [-] EMBL CD076801 [TCAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTTGAGGTGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAACTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTTACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCGTGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCCGATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTAAATAAACGACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5756#0 CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGA 60 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 ATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACT 120 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 TTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTA 180 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 GACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATA 240 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 CTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATA 300 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 AACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGA 360 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 ATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCA 420 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 CTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTT 480 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 CTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGC 540 consensus_5756#1 ------------------------------------------------------------ consensus_5756#0 ATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGA 600 consensus_5756#1 -----------------------------------------------TCAACAGAGTAGA 13 ************ consensus_5756#0 TAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTGTTNTGAAGT 660 consensus_5756#1 TAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGT 73 ******************************************* *** * *** ****** consensus_5756#0 TCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCT 720 consensus_5756#1 TCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTT 133 ********************************************************** * consensus_5756#0 GAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTAC 780 consensus_5756#1 GAGG-TGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTAC 192 **** ********************* ********************************* consensus_5756#0 CCTTGA-CTATTTCAGATG-CAGCAA-TACCTAATTTCCTTTTCTNACACAC---CGTA- 833 consensus_5756#1 CCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAA 252 ****** ************ ****** ********** * *** * ***** **** consensus_5756#0 CTTGTAACT-GCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANT 892 consensus_5756#1 CTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTT 312 ********* ****** ** ** * * * * * * * *** * *** * consensus_5756#0 A-TGGNTCAGATACTAAA---GGGGTTTCGTGAGCTGTCGGCATT--------------- 933 consensus_5756#1 ACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCG 372 * * * * ** * * ** *** * *** * consensus_5756#0 ------------------------------------------------------------ consensus_5756#1 TGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCC 432 consensus_5756#0 ------------------------------------------------------------ consensus_5756#1 GATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTA 492 consensus_5756#0 ------------- consensus_5756#1 AATAAACGACGCA 505 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||