These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence [CATAGTTTCTTATTTTATTATTTATCCGCCAAACAAAATTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAAACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACAAACGATACTTTTCTCCGACGTACTTGCTACTGTTGACAGCTTTTGCAACTATATGAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCAGCACCGGATAAAGTCAAACTTGAAGCAGAACTAACAACTAGATATTCTGATATTTCAAGACCGAATGCTAACACAGCTCCAGTACCTAGTTGGACTAAGTCGCCTATTAACTGATCAAAGGCAGCAGTGCGAAAAAGATTCCTCGCTGTTATGAGTTCAAAACCTTCGATGTAAAGAGAAAGGGGCAAAATAGCCAGTGCCATCCATGGTTGTGAGTGGAACATAAAATCAATAGGATGAGAAAGACCATAACATTGTCCTTGTACGAATAGCTGG] [+] EMBL CD077236 [CATAGTTTCTTATTTTATTATTTATCCGCCAAACAAAATTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAAACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACAAACGATACTTTTCTCCGACGTACTTGCTACTGTTGACAGCTTTTGCAACTATATGAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCAGCACCGGATAAAGTCAAACTTGAAGCAGAACTAA ] [+] EMBL CD074293 [ ACAAAATTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATTGGCGTTCCTGATTTAACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGCTACTGTTGACAGCTTTTGCAACTATATGAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCAGCAACGGATAAAGTCAAACTTGAAGCAGAACTAACAACTAGATATTCTGATATTTCAAGACCGAATGCTAACACAGCTCCAGTACCTAGTTGGACTAAGTCGCCTATTAACTGATCAAAGGCAGCAGTGCGAAAAAGATTCCTCGCTGTTATGAGTTCAAAACCTTCGATGTAAAGAGAAAGGGGCAAAATAGCCAGTGCCATCCATGGTTGTGAGTGGAACATAAAATCAATAGGATGAGAAAGACCATAACATTGTCCTTGTACGAATAGCTGG] consensusID : consensus_5785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [AAATTTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGTATGGGGGCGGTGGTTTGGCTTATTATAGAGAGGGGTGATTCCCCCCAAACAGATGACGAACCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCCAGCACGGATAAAGTCAAACTTT] [+] EMBL CD074473 [AAATTTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGTATGGGGGCGGTGGTTTGGCTTATTATAGAGAGGGGTGATTCCCCCCAAACAGATGACGAACCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCCAGCACGGATAAAGTCAAACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5785#0 CATAGTTTCTTATTTTATTATTTATCCGCCAAACAAAATTGACTGAAAATTGAATAAATA 60 consensus_5785#1 ----------------------------------AAATTTGACTGAAAATTGAATAAATA 26 *** ********************** consensus_5785#0 TGAAAATTAAGAGGTAAATAGAGATTCGAAAACTTGCAGTCCTATGGGCGTTCCTGATTT 120 consensus_5785#1 TGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATGGGCGTTCCTGATTT 86 ****************************** ***************************** consensus_5785#0 AACTTTTTCGCTCACAAACGATACTTTTCTCCGACGTACTTGC-TACTGTTGACAGCTTT 179 consensus_5785#1 AACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGTATGGGGGCGGTGGTTTG 146 *************** ************************** * * * * ** consensus_5785#0 TGCAACTATAT-GAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGA 238 consensus_5785#1 GCTTATTATAGAGAGGGGTGATTCCCCCCAAACAGATGACGAACCCAAACACATTTACGA 206 * **** ** * ******** * *************** **************** consensus_5785#0 GAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATA 298 consensus_5785#1 GAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATA 266 ************************************************************ consensus_5785#0 TACCAGCACCGGATAAAGTCAAACTTGAAGCAGAACTAACAACTAGATATTCTGATATTT 358 consensus_5785#1 TACCCAGCACGGATAAAGTCAAACTTT--------------------------------- 293 **** ***************** consensus_5785#0 CAAGACCGAATGCTAACACAGCTCCAGTACCTAGTTGGACTAAGTCGCCTATTAACTGAT 418 consensus_5785#1 ------------------------------------------------------------ consensus_5785#0 CAAAGGCAGCAGTGCGAAAAAGATTCCTCGCTGTTATGAGTTCAAAACCTTCGATGTAAA 478 consensus_5785#1 ------------------------------------------------------------ consensus_5785#0 GAGAAAGGGGCAAAATAGCCAGTGCCATCCATGGTTGTGAGTGGAACATAAAATCAATAG 538 consensus_5785#1 ------------------------------------------------------------ consensus_5785#0 GATGAGAAAGACCATAACATTGTCCTTGTACGAATAGCTGG 579 consensus_5785#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||