These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 504 fasta sequence [CTGTCTCCTGGTGTGAGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTT-AACTGTGGGGAAGCTTTCTACAGCATGGATAGGAAACCTTTGTAGAACCTTCTCCGACACCATGGTATACCCTAGAATATTGTCACCAACACGCGGAATTTACATAATAGTCTACACTGCAAAGCCGTGCATGGAGGATAGCTGACTGATGCATTTTAAGAGAACGCCGGCGCCGAGCAAGGCTGATTACTGTCGCCCTTCGTCCTACTTTAGGTGGCCCACTGGATTATAAAGACCTCCACTTCTCAGAGAAAGCACAGAATACAA] [+] EMBL CD087860 [CTGTCTCCTGGTGTGAGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTT AACTGTGGGGAAGCTTTCTACAGCATGGATAGGAAACCTTTGTAGAACCTTCTCCGACACCATGGTATACCCTAGAATATTGTCACCAACACGCGGAATTTACATAATAGTCTACACTGCAAAGCCGTGCATGGAGGATAGCTGACTGATGCATTTTAAGAGAACGCCGGCGCCGAGCAAGGCTGATTACTGTCGCCCTTCGTCCTACTTTAGGTGGCCCACTGGATTATAAAGACCTCCACTTCTCAGAGAAAGCACAGAATACAA] [+] EMBL CD087939 [ TGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTTAAACTGT GGGAAGCTTTCTACAGCAT ] consensusID : consensus_5796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [CGACGTTCTATTCATGAAGATTTGGGAGGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACAATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTTAACTGTGAGGAAGCTTTCTACAGCATG] [+] EMBL CD087922 [CGACGTTCTATTCATGAAGATTTGGGAGGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACAATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTTAACTGTGAGGAAGCTTTCTACAGCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5796#0 -------CTGTCTCCTGGTGT-----GAGAACAAGTGCCAGCAAACTGGAAATAAGGATA 48 consensus_5796#1 CGACGTTCTATTCATGAAGATTTGGGAGGAACAAGTGCCAGCAAACTGGAAATAAGGATA 60 ** * * ******************************** consensus_5796#0 GCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTAT 108 consensus_5796#1 GCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTAT 120 ************************************************************ consensus_5796#0 AAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAA 168 consensus_5796#1 AAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAA 180 ************************************************************ consensus_5796#0 ACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATC 228 consensus_5796#1 ACCACAACATCACGGATCATTTTTGAACAATTGGCTGAGAGGAATTCGTCACTATAAATC 240 **************************** ******************************* consensus_5796#0 AACTCCCTTAACTGTGGGGAAGCTTTCTACAGCATGGATAGGAAACCTTTGTAGAACCTT 288 consensus_5796#1 AACTCCCTTAACTGTGAGGAAGCTTTCTACAGCATG------------------------ 276 **************** ******************* consensus_5796#0 CTCCGACACCATGGTATACCCTAGAATATTGTCACCAACACGCGGAATTTACATAATAGT 348 consensus_5796#1 ------------------------------------------------------------ consensus_5796#0 CTACACTGCAAAGCCGTGCATGGAGGATAGCTGACTGATGCATTTTAAGAGAACGCCGGC 408 consensus_5796#1 ------------------------------------------------------------ consensus_5796#0 GCCGAGCAAGGCTGATTACTGTCGCCCTTCGTCCTACTTTAGGTGGCCCACTGGATTATA 468 consensus_5796#1 ------------------------------------------------------------ consensus_5796#0 AAGACCTCCACTTCTCAGAGAAAGCACAGAATACAA 504 consensus_5796#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||