These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAAGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGGTAATCATTTATATTTTAGTCCAGCAACACACAAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGATAAGGTTGGTCTGGAAACTCAGAACAATTAACTCAATCAATTAAAGAAGAACATGATAAATTTAGAAATGAAGCTGATGCAAAACGGCTGCTAATATCAGAAAATAATGCAATGAGAATGCAGTTTGATGA] [+] EMBL CD171352 [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAAGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGGTAATCATTTATATTTTAGTCCAGCAACACACAAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGATAAGGTTGGTCTGGAAACTCAGAACAATTAACTCAATCAATTAAAGAAGAACATGATAAATTTAGAAATGAAGCTGATGCAAAACGGCTGCTAATATCAGAAAATAATGCAATGAGAATGCAGTTTGATGA] consensusID : consensus_5910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [CTGTGCCTCAGCCTTGTAAAAGCCCAAATATTCTTCATATTCCTTATAAATGTCTGAAAGAAAAGTTCTATATGTCTTAAACTCATGGATAAATGACTGAAATGCTTCTTTGTAAATCTGGAACCTGAGGTCTCTGTCATTTGACCGTATATTTTTTAATCCATTACATATCTTCTTTTCGAGTATATCAAGAAATTTCGGTTTGGGGACGATATTAGGGATTTTTGTTTCAACTTCTGTCAACGAAACTAATCTATTATTGACAACACATGCATTTGACTTAGC] [+] EMBL CD189955 [CTGTGCCTCAGCCTTGTAAAAGCCCAAATATTCTTCATATTCCTTATAAATGTCTGAAAGAAAAGTTCTATATGTCTTAAACTCATGGATAAATGACTGAAATGCTTCTTTGTAAATCTGGAACCTGAGGTCTCTGTCATTTGACCGTATATTTTTTAATCCATTACATATCTTCTTTTCGAGTATATCAAGAAATTTCGGTTTGGGGACGATATTAGGGATTTTTGTTTCAACTTCTGTCAACGAAACTAATCTATTATTGACAACACATGCATTTGACTTAGC] consensusID : consensus_5910#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAGGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGAAAAGGTTGGT] [+] EMBL CD171221 [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAGGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGAAAAGGTTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5910#0 TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAAGCTTAGACCAGTCAAGGAATA 60 consensus_5910#2 TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAGGCTTAGACCAGTCAAGGAATA 60 consensus_5910#1 ------------------CTGTGCCTCAGCCTTGTAAAAGCCCAAAT-ATTCTTCATATT 41 * * * * * ** * * * ** ** consensus_5910#0 CCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAG 120 consensus_5910#2 CCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAG 120 consensus_5910#1 CCTTATAA--ATGTCTGAAAGAAAAGTTCTATATGTCTTAAACTCATGGATAAATGACTG 99 *** * ** *** ** * * * * * * ***** * * ** ** * consensus_5910#0 ACCAGGTAATCATTTATATTTTAGTCCAGCAACACACAAGAACTCAATAGTTTGAAACGA 180 consensus_5910#2 ACCAG-----------------------------------AACTCAATAGTTTGAAACGA 145 consensus_5910#1 AAATGCTTCTTTGTAAATCTGGA----------ACCTGAGGTCTCTGTCATTTGACCGTA 149 * * *** * ***** * consensus_5910#0 GAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGATA----AGGTTGGTCT 236 consensus_5910#2 GAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGAAA----AGGTTGGT-- 199 consensus_5910#1 TATTTTTTAATCCATTACATATCTTCTTTTCGAGTATATCAAGAAATTTCGGTTTGGGGA 209 * ** *** * ** ** * * ** * * ** * * **** consensus_5910#0 GGAAACTCAGAACAATTAACTCAATCAATTAAAGAAGAACATGATAAATTTAGAAATGAA 296 consensus_5910#2 ------------------------------------------------------------ consensus_5910#1 CGATATTAGGGATTTTTGTTTCAACTTCTGTCAACGAAACTAATCTATTATTGACAACAC 269 consensus_5910#0 GCTGATGCAAAACGGCTGCTAATATCAGAAAATAATGCAATGAGAATGCAGTTTGATGA 355 consensus_5910#2 ----------------------------------------------------------- consensus_5910#1 ATGCATTTGACTTAGC------------------------------------------- 285 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||