These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 392 fasta sequence [TCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCTTCAACAGCACTGTCATACGTTCCTTTAGCCTCCGCACGTGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTTATTTGCACACTCTTTAACGGGATATTTGTGCATGACCTTTGGCATACAAGGCCAAGGTGTTTATTATCCGATATGTTCCAACCAAAATTCATTTATAAAATTTTTACACGTCAA] [+] EMBL CD152070 [TCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCTTCAACAGCACTGTCATACGTTCCTTTAGCCTCCGCACGTGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTTATTTGCACACTCTTTAACGGGATA ] [+] EMBL CD163605 [ ACACACGGATACTATTTTGTTGTCACCAATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGGCGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTTATTTGAACACTCTTTAACGGGATATTTGTGCATGACCTTTGGCATACAAGGCCAAGGTGTTTATTATCCGATATGTTCCAACCAAAATTCATTTATAAAATTTTTACACGTCAA] consensusID : consensus_5946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [AACATATCGCAGAACTATAGCAACCTTTCCATTTGGCGGTATGTCCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCATCAACAGCACTGTCATACGTTTCTTTAGCCTCCGCACGCGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTCACATGAACCATGCTATGCCA] [-] EMBL CD151974 [AACATATCGCAGAACTATAGCAACCTTTCCATTTGGCGGTATGTCCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCATCAACAGCACTGTCATACGTTTCTTTAGCCTCCGCACGCGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTCACATGAACCATGCTATGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5946#0 --------------------------------------------TCCCAATGTTCATTTT 16 consensus_5946#1 AACATATCGCAGAACTATAGCAACCTTTCCATTTGGCGGTATGTCCCCAATGTTCATTTT 60 *************** consensus_5946#0 AAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCTTCAAC 76 consensus_5946#1 AAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCATCAAC 120 ****************************************************** ***** consensus_5946#0 AGCACTGTCATACGTTCCTTTAGCCTCCGCACGTGGACGACACACGGATACTATTTTGTT 136 consensus_5946#1 AGCACTGTCATACGTTTCTTTAGCCTCCGCACGCGGACGACACACGGATACTATTTTGTT 180 **************** **************** ************************** consensus_5946#0 GTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGA 196 consensus_5946#1 GTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGA 240 ************************************************************ consensus_5946#0 CGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAG 256 consensus_5946#1 CGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAG 300 ************************************************************ consensus_5946#0 CATATTTATTATCCTACATTTTATTTGCAC-ACTCTTTAACGGGATATTTGTGCATGACC 315 consensus_5946#1 CATATTTATTATCCTACATTTCACATGAACCATGCTATGCCA------------------ 342 ********************* * ** ** * ** * * consensus_5946#0 TTTGGCATACAAGGCCAAGGTGTTTATTATCCGATATGTTCCAACCAAAATTCATTTATA 375 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 AAATTTTTACACGTCAA 392 consensus_5946#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||