These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [ATTAGTTGAAATTAATTTATCATCAGCTTGTATAAAATATTTTGCAGCTGTAAATAATGTTGATGCTTCAGAAGTTACATTTTTAGCAGCAAATTCACATCTGAAGAAAAAAAAAGCAAAATTCACGGTCGAATACAAACTAATAGGGATTCTTCGGAATCCATTACTAACATCATAGAATAATCTTAGCAAACTATCATTGAGAACCACGAAGCACTGAATAGATATTTCTTTTTCGTATCGTACTCTTCAGTAGTGTGCATCCACGATCCCGCCACTAGAGATCGAGTATAGGAAGACGGTTGGGTGATCTTATGAATTACTTGAAGTTAAACATCTGTAACGTTGGACGCCATCTTGAAGGTCTAGTGGCTTAGTATTTGTATGAGAAACCGAAGTTCCTGGGTTCGATTTCTGTGGTTGGGGTCTTGAATGCCCATTGACGAGAAGTCCTGTAAGCAGCTGTTCAGCATTTCCTAGT] [+] EMBL CD137190 [ATTAGTTGAAATTAATTTATCATCAGCTTGTATAAAATATTTTGCAGCTGTAAATAATGTTGATGCTTCAGAAGTTACATTTTTAGCAGCAAATTCACATCTGAAGAAAAAAAAAGCAAAATTCACGGTCGAATACAAACTAATAGGGATTCTTCGGAATCCATTACTAACATCATAGAATAATCTTAGCAAACTATCATTGAGAACCACGAAGCACTGAATAGATATTTCTTTTTCGTATCGTACTCTTCAGTAGTGTGCATCCACGATCCCGCCACTAGAGATCGAGTATAGGAAGACGGTTGGGTGATCTTATGAATTACTTGAAGTTAAACATCTGTAACGTTGGACGCCATCTTGAAGGTCTAGTGGCTTAGTATTTGTATGAGAAACCGAAGTTCCTGGGTTCGATTTCTGTGGTTGGGGTCTTGAATGCCCATTGACGAGAAGTCCTGTAAGCAGCTGTTCAGCATTTCCTAGT] consensusID : consensus_5970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [AATTATCCCCAAATCTACAAGGCTCTTAGTACTGATGTTAAGAAAAAATCAAACGAGATAAATATGTGTGACCAACAGGCTAATGACTTTGCTTGTGTAGCGAAAAGTTTGGCTGTCCAAGAGTGTCATGAATTAGCGGCAGTTTTTTACTGGGCAAAGCAAGATGTGAATTTGCTGCTAAAAATGTAACTTCTGAAGCGTCAACATTATTTACAGCTGCAAAATATTTTATACAAGCTGATGATAAATTAATTTCAACTAATTCTATTAATTATGAGGATAATTTAAATTGCGCGATTCTTTGTTTGTTAAGAACAGCAAGAATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGAGGCGATCT] [+] EMBL CD094211 [AATTATCCCCAAATCTACAAGGCTCTTAGTACTGATGTTAAGAAAAAATCAAACGAGATAAATATGTGTGACCAACAGGCTAATGACTTTGCTTGTGTAGCGAAAAGTTTGGCTGTCCAAGAGTGTCATGAATTAGCGGCAGTTTTTTACTGGGCAAAGCAAGATGTGAATTTGCTGCTAAAAATGTAACTTCTGAAGCGTCAACATTATTTACAGCTGCAAAATATTTTATACAAGCTGATGATAAATTAATTTCAACTAATTCTATTAATTATGAGGATAATTTAAATTGCGCGATTCTTTGTTTGTTAAGAACAGCAAGAATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGAGGCGATCT] consensusID : consensus_5970#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [TATATATGTGCATACAATAGATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGGTAATTCATTTTTTTCTGTTTTTTTTCTTTTCAACTAACTCGTTGAGAAAGGAACACTTGAAATAAATCAAGTAACCTATTGTAACTGTAGTGGCTGGCTCTATTTCAAACCCACATAGGCTATTCTAGTTTTTGAACTGAACACTCTACTCGTTCTTCTCAAGCCACATTTTTACCCTGCCACTTATTCGCTTATTAATCNCGACTTTTTTTTATATGATCGTATGTGCGCTAATTACTTTTACCTACTCATAT] [+] EMBL CD194055 [TATATATGTGCATACAATAGATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGGTAATTCATTTTTTTCTGTTTTTTTTCTTTTCAACTAACTCGTTGAGAAAGGAACACTTGAAATAAATCAAGTAACCTATTGTAACTGTAGTGGCTGGCTCTATTTCAAACCCACATAGGCTATTCTAGTTTTTGAACTGAACACTCTACTCGTTCTTCTCAAGCCACATTTTTACCCTGCCACTTATTCGCTTATTAATCNCGACTTTTTTTTATATGATCGTATGTGCGCTAATTACTTTTACCTACTCATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5970#1 ----------------------------------------------------AATTATCC 8 consensus_5970#2 -------------------------------------------------------TATAT 5 consensus_5970#0 ATTAGTTGAAATTAATTTATCATCAGCTTGTATAAAATATTTTGCAGCTGTAAATAATGT 60 ** consensus_5970#1 CCAAATCTACAA-G----GCTCTTAGTACTGATGTTAAGAAAAAATCAAACGAGATAAAT 63 consensus_5970#2 ATGTGCATACAATA----GATCTATGAATTGA----ATGAACTTTTCACATTAGCAACAA 57 consensus_5970#0 TGATGCTTCAGAAGTTACATTTTTAGCAGCAAATTCACATCTGAAGAAAAAAAAAGCAAA 120 * * * * * * * * * * * * consensus_5970#1 ATGTGTGACCAACAGGCTAATGACTTTGCTTGTGTAGCGAAAAGTTTGGCTGTCCAAGAG 123 consensus_5970#2 ATGTCTA--CATTTATCTGGTGGATACGTTAATGGTAATTCATTTTTTTCTGTTTTTTT- 114 consensus_5970#0 ATTCACGGTCGAATACAAACTAATAGGGATTCTTCGGAATCCATTACTAACATCATAGAA 180 ** * * * * * * * consensus_5970#1 TGTCATGAATTAGCGGCAGTTTTTTACTGGGCAAAGCAAGATGTGAATTTGCTGCTAAAA 183 consensus_5970#2 TCTTTTCAACTAAC-----TCGTTGAGAAAGGAACACTTGAAATAAATCAAGTAACCTAT 169 consensus_5970#0 TAATCTTAGCAAACTATCATTGAGAACCACGAAGCACTGAATAGATATTTCTTTTTCGTA 240 * * * * * * * * * * * ** * consensus_5970#1 ATGTAA-CTTCTGAAGCGTCAACATTATTTACAGCTGCAAAATATTTTATACAAGCTGAT 242 consensus_5970#2 -TGTAA-CTGTAGTGGC--TGGCTCTATTTCAAAC--CCACATAGGCTATTCTAGTTTTT 223 consensus_5970#0 TCGTACTCTTCAGTAGTGTGCATCCACGATCCCGCCACTAGAGATCGAGTATAGGAAGAC 300 *** ** * * * * * * * * * * consensus_5970#1 GATAAATTAAT-TTCAACTAATTCTATTAATTATGAGGATAATTTAAATTGCGCGATTCT 301 consensus_5970#2 GA--ACTGAACACTCTACTCGTTCTTCTCA----AGCCACATTTTTACCCTGCCACTTAT 277 consensus_5970#0 GG---TTGGGTGATCTTATGAATTACTTGAAGTTAAACATCTGTAACGTTGGACGCCATC 357 * * ** * * * * * * * consensus_5970#1 TTGTTTGT-TAAGAACAGCAAGAATCTATGAATTGAATGAACTTTTCACATTAGCAACAA 360 consensus_5970#2 TCGCTTAT-TAATCNCGACTTTTTTTTATA---TGATCGTATGT---GCGCTAATTACTT 330 consensus_5970#0 TTGAAGGTCTAGTGGCTTAGTATTTGTATGAG-AAACCGAAGTTCCTGGGTTCGATTTCT 416 * * * ** * * *** * * * * * consensus_5970#1 ATGTCTACATTTATCTGGTGGATACGTTAATGAGGCGATCT------------------- 401 consensus_5970#2 TTACCTACTCATAT---------------------------------------------- 344 consensus_5970#0 GTGGTTGGG---GTCTTGAATGCCCATTGACGAGAAGTCCTGTAAGCAGCTGTTCAGCAT 473 * * * consensus_5970#1 -------- consensus_5970#2 -------- consensus_5970#0 TTCCTAGT 481 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||