These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [GCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGTAAGTATATTTCGAGTACAGAACGCAGCAACGTAATTTCGAAATTCGTCCAGGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTAAGATAATTTTACCTAGAAAAAATATACATTGTCGCTCAAACAAATAAAACTGAGTTTGACCACTTATATCGTAAGCCATCTTAA] [+] EMBL CD094063 [GCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGTAAGTATATTTCGAGTACAGAACGCAGCAACGTAATTTCGAAATTCGTCCAGGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTAAGATAATTTTACCTAGAAAAAATATACATTGTCGCTCAAACAAATAAAACTGAGTTTGACCACTTATATCGTAAGCCATCTTAA] consensusID : consensus_5974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 333 fasta sequence [CAATACACAAAGTTAATCCTGGAAATCTACAAAAAATAAGATGCAAGGCTATGCTTCTTATGCTGGAGGCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTACCTTCAAGACCTAGAACAACTAAAAAAATTTGAAGAGGAATACTTAAGCTTGCGTACTGAGGTGGGGA] [+] EMBL CD131455 [CAATACACAAAGTTAATCCTGGAAATCTACAAAAAATAAGATGCAAGGCTATGCTTCTTATGCTGGAGGCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTACCTTCAAGACCTAGAACAACTAAAAAAATTTGAAGAGGAATACTTAAGCTTGCGTA ] [-] EMBL CD179248 [ GGAAAGATTGGAGAAAGTGCATACGAGGAGAACGAGGGGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTACCTTCAAGACCTAGAACAAGTAAAAAAATTTGAAGAGGAATACTTAAGCTTGCGTACTGAGGTGGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5974#0 ------GCCCAGTTGGGCTTGGTAACTCGCC----------TGTTGTTTTATATTTTTAA 44 consensus_5974#1 CAATACACAAAGTTAATCCTGGAAATCTACAAAAAATAAGATGCAAGGCTATGCTTCTTA 60 * **** * *** ** * ** *** ** * * consensus_5974#0 T-CAGGTGATCCTAACAGTAAGTATATTTCGAGTACAGAACGCAGCAACGTAATTTCGAA 103 consensus_5974#1 TGCTGGAGGCCCAGTTGGGCTTGGTAACTCGCCTGTTG--TTTTATATTTTTAATCAGGT 118 * * ** * ** * ** *** * * * * * * * consensus_5974#0 ATTCGTCCAGGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAA 163 consensus_5974#1 GATCCTAACAGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAA 178 ** * ************************************************** consensus_5974#0 GTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTT 223 consensus_5974#1 GTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTT 238 ************************************************************ consensus_5974#0 GATATTTGAACAGTGTCAGATGAGGTAAGATAATTTTACCTAGAAAAAATATACATTGTC 283 consensus_5974#1 GATATTTGAACAGTGTCAGATGAGGTACCTTCAAG--ACCTAGAACAACTAAAAAA---- 292 *************************** * * ******** ** ** * * consensus_5974#0 GCTCAAACAAATAAAACTGAGTTTGACCACTTATATCGTAAGCCATCTTAA 334 consensus_5974#1 ATTTGAAGAGGAATACTTAAGCTTGCGTACTGAGGTGGGGA---------- 333 * ** * * * * ** *** *** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||