These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [GAGCCAGATTCGGCCGAGGAGATATACGTGGTCCATTATCCGGTTTAACACGAATGACTACACGACCTGAAGTATCGTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATTTATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAATTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTATTTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCAAAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAGCACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTGTCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTACTTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACTAGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAATAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAANAATATTTCCATTTTTCGTTGCAGAGATTCTATTTTATGAATGAAATGATATATGATTATG] [+] EMBL CD080642 [GAGCCAGATTCGGCCGAGGAGATATACGTGGTCCATTATCCGGTTTAACACGAATGACTACACGACCTGAAGTATCGTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATTTATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAATTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTATTTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCAAAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAGCACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTGTCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTACTTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACTAGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAATAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAANAATATTTCCATTTTTCGTTGCAGAGATTCTATTTTATGAATGAAATGATATATGATTAT ] [-] EMBL CD074555 [ GTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATTTATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAATTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTATTTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCAAAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAGCACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTGTCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTACTTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACTAGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAATAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAAAAATATTTCCATTTTTCGTTGCAGAGAGTCTATTTTATGAATGAAAAGATATATGATTATG] consensusID : consensus_5998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence [TTGGACGATACTTCAGGTCGTGTAGTCATTTGTGTTAAACCGGATAATGGACCACGCATATCTCCATTCGGTTCAAACAGATGTGAAAATAATGCATGTACTTTGAATAATTCA] [+] EMBL CD065566 [TTGGACGATACTTCAGGTCGTGTAGTCATTTGTGTTAAACCGGATAATGGACCACGCATATCTCCATTCGGTTCAAACAGATGTGAAAATAATGCATGTACTTTGAATAATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5998#0 GAGCCAGATTCGGCCGAGGAGATATACGTGGTCCATTATCCGGTTTAACACGAATGACTA 60 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 CACGACCTGAAGTATCGTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATT 120 consensus_5998#1 --------------TTGGACGATACTTCAGGTCGTGTAGTCATTTGTGTTAAACCGGATA 46 * * *** * * * * * * * ** ****** consensus_5998#0 TATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAA 180 consensus_5998#1 ------ATGGACCACGCATATCTCC--ATTCGGTTCAAACAGATG-TGAAAATAATGCAT 97 ******* ** * ** *** ** *** ** * ** *** ** consensus_5998#0 TTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTAT 240 consensus_5998#1 GTACTTTGA--ATAATTCA----------------------------------------- 114 * ** *** * * *** consensus_5998#0 TTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCA 300 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 AAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAG 360 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 CACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTG 420 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 TCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTAC 480 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 TTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACT 540 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 AGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAA 600 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 TAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAANAATATTTCCATTTTTCG 660 consensus_5998#1 ------------------------------------------------------------ consensus_5998#0 TTGCAGAGATTCTATTTTATGAATGAAATGATATATGATTATG 703 consensus_5998#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||