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Schistosoma mansoni
cluster # 6001 cluster # 6001       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6001#0 length = 651 sequences # 2  
consensus_6001#1 length = 575 sequences # 1  

consensusID : consensus_6001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 651
fasta sequence
                              [CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAAAGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACCCAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTTTATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT]

[+] EMBL CD082617             [CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAAAGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACCCAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTTTATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT]
[-] EMBL CD155675             [                                                                                                                 AGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAA                                                                                                                                                                                                                             ]


>consensus_6001#0 CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGG ACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGAT TCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACA CAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTA AATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCA TGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAA CGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATT AGTTCAGAAACTAAACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCT AAGAAGATGATCAAAGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTA ATGGAATTAGAACCCAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGT GTGGATGCAGAGTTTATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT



consensusID : consensus_6001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence
                              [AAATTTACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCATTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCANAGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT]

[+] EMBL CD186020             [AAATTTACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCATTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCANAGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT]


>consensus_6001#1 AAATTTACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTT GAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTC GAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTG AAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAA AGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAG ATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACA ATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCATTTCCATACCTTA ATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCANAAT CGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCANAGAAGTGCCGATG GCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6001#0      CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGG 60
consensus_6001#1      ----------AAATTT---ACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGG 47
                                 ****    ***   ***********************************

consensus_6001#0      ACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGAT 120
consensus_6001#1      ACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGAT 107
                      ************************************************************

consensus_6001#0      TCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACA 180
consensus_6001#1      TCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACA 167
                      ************************************************************

consensus_6001#0      CAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTA 240
consensus_6001#1      CAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTA 227
                      ************************************************************

consensus_6001#0      AATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCA 300
consensus_6001#1      AATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCA 287
                      ************************************************************

consensus_6001#0      TGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAA 360
consensus_6001#1      TGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAA 347
                      ************************************************************

consensus_6001#0      CGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACG-------------------- 400
consensus_6001#1      CGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCA 407
                      ****************************************                    

consensus_6001#0      --------------------------CTGCATCATTAAAGCTAATTAGTTCAGAAACTAA 434
consensus_6001#1      TTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAA 467
                                                **********************************

consensus_6001#0      ACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAA 494
consensus_6001#1      ACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCAN 527
                      ********* ******************************* ***************** 

consensus_6001#0      AGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACC 554
consensus_6001#1      AGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT------------ 575
                      *********************************   ************            

consensus_6001#0      CAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTT 614
consensus_6001#1      ------------------------------------------------------------
                                                                                  

consensus_6001#0      TATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT 651
consensus_6001#1      -------------------------------------
                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)