These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 651 fasta sequence [CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAAAGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACCCAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTTTATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT] [+] EMBL CD082617 [CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAAAGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACCCAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTTTATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT] [-] EMBL CD155675 [ AGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAA ] consensusID : consensus_6001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [AAATTTACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCATTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCANAGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT] [+] EMBL CD186020 [AAATTTACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCATTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCANAGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6001#0 CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGG 60 consensus_6001#1 ----------AAATTT---ACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGG 47 **** *** *********************************** consensus_6001#0 ACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGAT 120 consensus_6001#1 ACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGAT 107 ************************************************************ consensus_6001#0 TCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACA 180 consensus_6001#1 TCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACA 167 ************************************************************ consensus_6001#0 CAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTA 240 consensus_6001#1 CAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTA 227 ************************************************************ consensus_6001#0 AATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCA 300 consensus_6001#1 AATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCA 287 ************************************************************ consensus_6001#0 TGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAA 360 consensus_6001#1 TGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAA 347 ************************************************************ consensus_6001#0 CGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACG-------------------- 400 consensus_6001#1 CGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCA 407 **************************************** consensus_6001#0 --------------------------CTGCATCATTAAAGCTAATTAGTTCAGAAACTAA 434 consensus_6001#1 TTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAA 467 ********************************** consensus_6001#0 ACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAA 494 consensus_6001#1 ACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCAN 527 ********* ******************************* ***************** consensus_6001#0 AGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACC 554 consensus_6001#1 AGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT------------ 575 ********************************* ************ consensus_6001#0 CAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTT 614 consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 TATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT 651 consensus_6001#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||