These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 481 fasta sequence [AGTTTAGTAACGATGTCGAGGAGACGTTGGTAGTAGCTACCGATGAATGAATGACAGTTTGAGCTGCAGGAGAACGGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAGGTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCACTAGGGGCATGAGGGCAGACCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGACCACGCTATATAAACTATCTGTATGTTTGAAACGAGCATCACCCTGTTTGGTTTTTAGATCCCATAATACGAGAAACCCCGAAGAATAACCAATAAGAATCTTGTTAGAATCTTGAGGATTCTCAGCTATCTGAATAACTTTCCCCGGATGCGATGACTGAGACAGATCGATAGCCTTGTTCCAATT] [+] EMBL CD121436 [AGTTTAGTAACGATGTCGAGGAGACGTTGGTAGTAGCTACCGATGAATGAATGACAGTTTGAGCTGCAGGAGAACGGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAGGTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCACTAGGGGCATGAGGGCAGACCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGACCACGCTATATAAACTATCTGTATGTTTGAAACGAGCATCACCCTGTTTGGTTTTTAGATCCCATAATACGAGAAACCCCGAAGAATAACCAATAAGAATCTTGTTAGAATCTTGAGGATTCTCAGCTATCTGAATAACTTTCCCCGGATGCGATGACTGAGACAGATCGATAGCCTTGTTCCAATT] [+] EMBL CD188157 [ GGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAGGTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCACTAGGGGCATGAGGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACT ] consensusID : consensus_6017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 150 fasta sequence [GNGCCGCCATGGTCTGGCCGCGGNGAATTCGATTACTTCGACCGGCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGG] [+] EMBL CD162388 [GNGCCGCCATGGTCTGGCCGCGGNGAATTCGATTACTTCGACCGGCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGG] [+] EMBL CD120536 [ GCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6017#0 AGTTTAGTAACGATGTCGAGGAGACGTTGGTAGTAGCTACCGATGAATGAATGACAGTTT 60 consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 GAGCTGCAGGAGAACGGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAG 120 consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 GTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCAC 180 consensus_6017#1 -----------------------GNGCCGCCATG-GTCTGGCCGCGGNGAATTCGATTAC 36 * * * * * * *** * ** consensus_6017#0 TAGGGGCATGAGGGCAGACCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTG 240 consensus_6017#1 TTCGACCGGCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTG 96 * * * ****** ***************************************** consensus_6017#0 CAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGACCACGC 300 consensus_6017#1 CAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGG------ 150 ***************************************************** consensus_6017#0 TATATAAACTATCTGTATGTTTGAAACGAGCATCACCCTGTTTGGTTTTTAGATCCCATA 360 consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 ATACGAGAAACCCCGAAGAATAACCAATAAGAATCTTGTTAGAATCTTGAGGATTCTCAG 420 consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 CTATCTGAATAACTTTCCCCGGATGCGATGACTGAGACAGATCGATAGCCTTGTTCCAAT 480 consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 T 481 consensus_6017#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||