These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 396 fasta sequence [GGAATTGTAAAGAAAACCTTCCTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTAACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACGATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTTGTAACTAACCGCATTTGTGGACAACACTGCACTTGAACGTAGACCAATTTTCTTTAGGTAGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTCTTTCTCCAATAACCCAATGGACAGCTGCAAACAGCAACTTATTTTAGCTTGGTGCGTTAACGATTACGTATTTATCGTTGGGAGACTAGTTGTAAAAAGCGG] [+] EMBL CD157269 [GGAATTGTAAAGAAAACCTTCCTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTAACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACGATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTTGTAACTAACCGCATTTGTGGACAACACTGCACTTGAACGTAGACCAATTTTCTTTAGGTAGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTCTTTCTCCAATAACCCAATGGACAGCTGCAAACAGCAACTTATTTTAGCTTGGTGCGTTAACGATTACGTATTTATCGTTGGGAGACTAGTTGTAAAAAGCG ] [-] EMBL CD157235 [ GAATTGTAAAGAAAACCTTCTTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTAACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACGATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTTGTAACTAACCGCATTTGTGGACAACACTGCACTTGAACATAGACCAATTTTCTTTAGGTAGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTTTTTCTCCAATAACCCAATGGCCAGCTGCAACCACCAACTTATTTTTGCTTGGTGCGTTAACGATTACGTATTTATTGTTGGGAGACTAGTTGTAAAAAGCGG] consensusID : consensus_6018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 143 fasta sequence [ATGCTATGTTACTAATAAGAACTCTTCGCCAGACGAAAATACGTTGCCGTTAAACACAGAGAAGCAAAAGGGGTCAGTTCAATAATTTTACTTAAATTTCGTAGAAGTGCACTGAAACGTAAAGAAGGTTTTCTTTACAATTC] [+] EMBL CD192184 [ATGCTATGTTACTAATAAGAACTCTTCGCCAGACGAAAATACGTTGCCGTTAAACACAGAGAAGCAAAAGGGGTCAGTTCAATAATTTTACTTAAATTTCGTAGAAGTGCACTGAAACGTAAAGAAGGTTTTCTTTACAATTC] [+] EMBL CD192239 [ATGCTATGTTACTAATAAGAACTCTTCGCCAGACGAAAATACGTTGCCGTTAAACACAGAGAAGCAAAAGGGGTCAGTTCAATAATTTTACTTAAATTTCGTAGAAGTGCACTGAAACGTAAAGAAGGTTTTCTTTACAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6018#0 GGAATTGTAAAGAAAACCTTCCTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTA 60 consensus_6018#1 ------------------------------------------------------------ consensus_6018#0 ACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACG 120 consensus_6018#1 ---------------------------ATGCTATGTTACTAATA-AGAACTCTTCGCCAG 32 * * *** *** * ** * * ** * * consensus_6018#0 ATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTT 180 consensus_6018#1 ACGAAAATACGTTGCCGTTAAACAC-AGAGAAGC----AAAAGGGGTCAGTTCAATAATT 87 * * ** * * * * * *** * * * * * * ** ** ** ** consensus_6018#0 GTAACTAACCGCATTTGTGGACAACACTGCACTTGAACGTAGACCAA-TTTTCTTTAGGT 239 consensus_6018#1 TTACTTAAAT---TTCGTAGA----AGTGCACTGAAACGTAAAGAAGGTTTTCTTTA--C 138 ** *** ** ** ** * ****** ****** * * ********* consensus_6018#0 AGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTCTTTCT 299 consensus_6018#1 AATTC------------------------------------------------------- 143 * ** consensus_6018#0 CCAATAACCCAATGGACAGCTGCAAACAGCAACTTATTTTAGCTTGGTGCGTTAACGATT 359 consensus_6018#1 ------------------------------------------------------------ consensus_6018#0 ACGTATTTATCGTTGGGAGACTAGTTGTAAAAAGCGG 396 consensus_6018#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||