These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 411 fasta sequence [TTTTGTGGGTAGTCTCAGTCACCACTCATGTATGGCGGTTTATCCTTTGGTCTCCTCTGGACAGTAAAATGGGTGTTTAAATCAAATGTTACTTCTTAAAACTATTATTACTTATCTATATTTGTTGGTCTCATTG-AGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCTCCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA] [+] EMBL CD200774 [TTTTGTGGGTAGTCTCAGTCACCACTCATGTATGGCGGTTTATCCTTTGGTCTCCTCTGGACAGTAAAATGGGTGTTTAAATCAAATGTTACTTCTTAAAACTATTATTACTTATCTATATTTGTTGGTCTCATTGTTGCA GTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACTTCGTTAATAACCATAATACCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGTTCT ] [+] EMBL CD184032 [ AGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCTCCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA] [+] EMBL CD183956 [ AGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCTCCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA] consensusID : consensus_6034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [ATTTGGCGCAAATATTCAGCTGACAACTGCCTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTATATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCA] [-] EMBL CD201170 [ATTTGGCGCAAATATTCAGCTGACAACTGCCTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTATATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6034#0 TTTTGTGGGTAGTCTCAGTCACCACTCATGTATGGCGGTTTATCCTTTGGTCTCCTCTGG 60 consensus_6034#1 ------------------------------------------------------------ consensus_6034#0 ACAGTAAAATGGGTGTTTAAATCAAATGTTACTTCTTAAAACTATTATTACTTATCTATA 120 consensus_6034#1 -------------------------------------------------ATTTGGC-GCA 10 * ** * * consensus_6034#0 TTTGTTGGTCTCATTGAGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTG 180 consensus_6034#1 AATATTCAGCTGACAACTGCCTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTG 70 * ** ** * *************************************** consensus_6034#0 CACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCT 240 consensus_6034#1 CACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCT 130 ************************************************************ consensus_6034#0 GAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTA 300 consensus_6034#1 GAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTATATGCAATGTTA 190 ************************************************ *********** consensus_6034#0 GCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCT 360 consensus_6034#1 GCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCA------------------ 232 ****************************************** consensus_6034#0 CCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA 411 consensus_6034#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||