cluster # 6045

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Schistosoma mansoni
cluster # 6045 cluster # 6045 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6045#0 length = 467 sequences # 1
consensus_6045#1 length = 403 sequences # 1

consensus_6045#2 length = 385 sequences # 1
consensus_6045#3 length = 363 sequences # 1

consensusID : consensus_6045#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [CAAGCTTACTATTTAATGGGAAGAGCTGGTGAACTTAAGGGCACCTCAATGTCCAATAATAAGACGATAATGTTAATGAGTTTTTTGTACATGTTTACGTAAAAATACATCACATCAATTGAATATCGTTGATACTGAAAACAACAAGGATTGACACGAACCAGTTTTTGTACAAAGGCAAAAATTCAGATGCTTAGTTGGACTGCAGGACGATTCAGTAACTCCCGGCCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAAGCAATCGAGCTATGCTGGCTGGAACAATCGTTCCTCGAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTACC]

[+] EMBL CD094370             [CAAGCTTACTATTTAATGGGAAGAGCTGGTGAACTTAAGGGCACCTCAATGTCCAATAATAAGACGATAATGTTAATGAGTTTTTTGTACATGTTTACGTAAAAATACATCACATCAATTGAATATCGTTGATACTGAAAACAACAAGGATTGACACGAACCAGTTTTTGTACAAAGGCAAAAATTCAGATGCTTAGTTGGACTGCAGGACGATTCAGTAACTCCCGGCCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAAGCAATCGAGCTATGCTGGCTGGAACAATCGTTCCTCGAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTACC]




>consensus_6045#0
CAAGCTTACTATTTAATGGGAAGAGCTGGTGAACTTAAGGGCACCTCAATGTCCAATAAT
AAGACGATAATGTTAATGAGTTTTTTGTACATGTTTACGTAAAAATACATCACATCAATT
GAATATCGTTGATACTGAAAACAACAAGGATTGACACGAACCAGTTTTTGTACAAAGGCA
AAAATTCAGATGCTTAGTTGGACTGCAGGACGATTCAGTAACTCCCGGCCGTTGCTGCTA
CCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAAGCAATCGAGCTATGCTGGCTGGA
ACAATCGTTCCTCGAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTAAGACTAA
AAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAGGTGTGACG
GCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTACC

consensusID : consensus_6045#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [ATCGTTCCTCAAGGTCCTAACATGCCAGGTAGATCCGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAAAGTCCGAAGGAGAAGTCTTACTGCTGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATAACAGCGATGCTGCCTTCCACAAGGAAGAGTGGAGTTAGAAAAGATCGACCCTAAAAATGCACACCCTGCCTTATCCCACGGATATCCGTCTCCAGCGGTAAGGTCCCAACAAGTAAGGAGCTAACACGAAAGTTACCCACAAGAAGATCGTGTGTGACCAGCCTCAAACAGTTGGCCCTTTGGCACTGCCGTCACTCACTCAGGTCACTAAAATTAGCTCTAACCCAATTTCCTTTCCAGGCTTCTCTAGGAG]

[+] EMBL CD186816             [ATCGTTCCTCAAGGTCCTAACATGCCAGGTAGATCCGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAAAGTCCGAAGGAGAAGTCTTACTGCTGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATAACAGCGATGCTGCCTTCCACAAGGAAGAGTGGAGTTAGAAAAGATCGACCCTAAAAATGCACACCCTGCCTTATCCCACGGATATCCGTCTCCAGCGGTAAGGTCCCAACAAGTAAGGAGCTAACACGAAAGTTACCCACAAGAAGATCGTGTGTGACCAGCCTCAAACAGTTGGCCCTTTGGCACTGCCGTCACTCACTCAGGTCACTAAAATTAGCTCTAACCCAATTTCCTTTCCAGGCTTCTCTAGGAG]




>consensus_6045#1
ATCGTTCCTCAAGGTCCTAACATGCCAGGTAGATCCGTTGAAGAGCGGTAAGACTAAAAG
CAGCAAACCCAAAGTCCGAAGGAGAAGTCTTACTGCTGACTGTACAGAGGTGTGACGGCA
GTAAGGTGTTTCCTTCAGACAACCAGCATAACAGCGATGCTGCCTTCCACAAGGAAGAGT
GGAGTTAGAAAAGATCGACCCTAAAAATGCACACCCTGCCTTATCCCACGGATATCCGTC
TCCAGCGGTAAGGTCCCAACAAGTAAGGAGCTAACACGAAAGTTACCCACAAGAAGATCG
TGTGTGACCAGCCTCAAACAGTTGGCCCTTTGGCACTGCCGTCACTCACTCAGGTCACTA
AAATTAGCTCTAACCCAATTTCCTTTCCAGGCTTCTCTAGGAG

consensusID : consensus_6045#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [GATCCTTACAGAATCCAGCCTGTTGATCTCGAAGTTCGGTGTCTATGAAGTCCTTCATTCTGCTTAACAATACCCTGTTGAAGACTTTTCCTGGTATTGAGAGAAGAGTGATGCCCTTGTAGTTAACATACTTTCTGAGATCGCTCTTGTTTGGCTGGTATTGATTGCTGCCTTTTGTTCCTCCTTTCTTGAATCTTATCCAGTGTACCAACAGTGATCCATTCCTTGTGATGGTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGATACTTTCCAGTTGCTCTCCATAGTAGTTCCCTCTCAACTGAGTACATCATGAAAGGCTTGGAACCTGTTGCTGATTTATTTATTTAAACACATAAATATTGGTACAAGGTTGCACC]

[+] EMBL CD132044             [GATCCTTACAGAATCCAGCCTGTTGATCTCGAAGTTCGGTGTCTATGAAGTCCTTCATTCTGCTTAACAATACCCTGTTGAAGACTTTTCCTGGTATTGAGAGAAGAGTGATGCCCTTGTAGTTAACATACTTTCTGAGATCGCTCTTGTTTGGCTGGTATTGATTGCTGCCTTTTGTTCCTCCTTTCTTGAATCTTATCCAGTGTACCAACAGTGATCCATTCCTTGTGATGGTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGATACTTTCCAGTTGCTCTCCATAGTAGTTCCCTCTCAACTGAGTACATCATGAAAGGCTTGGAACCTGTTGCTGATTTATTTATTTAAACACATAAATATTGGTACAAGGTTGCACC]




>consensus_6045#2
GATCCTTACAGAATCCAGCCTGTTGATCTCGAAGTTCGGTGTCTATGAAGTCCTTCATTC
TGCTTAACAATACCCTGTTGAAGACTTTTCCTGGTATTGAGAGAAGAGTGATGCCCTTGT
AGTTAACATACTTTCTGAGATCGCTCTTGTTTGGCTGGTATTGATTGCTGCCTTTTGTTC
CTCCTTTCTTGAATCTTATCCAGTGTACCAACAGTGATCCATTCCTTGTGATGGTGCTTC
TTGTGGCCCAGAACCTCCTGACATGTTGATACTTTCCAGTTGCTCTCCATAGTAGTTCCC
TCTCAACTGAGTACATCATGAAAGGCTTGGAACCTGTTGCTGATTTATTTATTTAAACAC
ATAAATATTGGTACAAGGTTGCACC

consensusID : consensus_6045#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [ACGAGATTCCATCTTTTATAGTTTNAGTATTATGCTTTTTTAACTNGCAAATATTNAGTTTATCATAGTNCGTTTCGCTTTNCTGANCCAGTTAAGGTAGTAGGTCATCAGNGGTATTGATCTNATGAACTATCAAGGGGGATAAAGTATGATCCATTTATGACTGATTNGATAGGTGGTGTTAATANNCCTTTACGGNTATTAATGAAGGTGCCGCATTCANNACTTGTAACATCTAGGGATGTCATACATTCTTTTCCAGTNCCTGACTTATATATAAAGATGGATGCAGTNCCAGGTCGAATTAATTGTTTAGNGGTANTATTAANTCGCTTAGGGGTGTTTAGAGGNTATNGTNCANAA]

[+] EMBL SM292                [ACGAGATTCCATCTTTTATAGTTTNAGTATTATGCTTTTTTAACTNGCAAATATTNAGTTTATCATAGTNCGTTTCGCTTTNCTGANCCAGTTAAGGTAGTAGGTCATCAGNGGTATTGATCTNATGAACTATCAAGGGGGATAAAGTATGATCCATTTATGACTGATTNGATAGGTGGTGTTAATANNCCTTTACGGNTATTAATGAAGGTGCCGCATTCANNACTTGTAACATCTAGGGATGTCATACATTCTTTTCCAGTNCCTGACTTATATATAAAGATGGATGCAGTNCCAGGTCGAATTAATTGTTTAGNGGTANTATTAANTCGCTTAGGGGTGTTTAGAGGNTATNGTNCANAA]




>consensus_6045#3
ACGAGATTCCATCTTTTATAGTTTNAGTATTATGCTTTTTTAACTNGCAAATATTNAGTT
TATCATAGTNCGTTTCGCTTTNCTGANCCAGTTAAGGTAGTAGGTCATCAGNGGTATTGA
TCTNATGAACTATCAAGGGGGATAAAGTATGATCCATTTATGACTGATTNGATAGGTGGT
GTTAATANNCCTTTACGGNTATTAATGAAGGTGCCGCATTCANNACTTGTAACATCTAGG
GATGTCATACATTCTTTTCCAGTNCCTGACTTATATATAAAGATGGATGCAGTNCCAGGT
CGAATTAATTGTTTAGNGGTANTATTAANTCGCTTAGGGGTGTTTAGAGGNTATNGTNCA
NAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6045#0      ---------CAAGCTTACTATTTAATGGGA--AGAGCTGGTGAACTTAAGGGCACCTCAA 49
consensus_6045#1      ATCGTTCCTCAAGGTCCTAACATGCCAGGT--AGATCCGTTG-----AAGAGCGGTAAGA 53
consensus_6045#3      --------ACGAGATTCCATCTTTT---AT--AGTTTNAGTA---TTATGCTTTTTTAAC 44
consensus_6045#2      -GATCCTTACAGAATCCAGCCTGTTGATCTCGAAGTTCGGTG--TCTATGAAGTCCTTCA 57
                               *    *                 *       *      * *          

consensus_6045#0      TGTCCAATAATAAGACGATAATGTTAATGAGTTTTTTGTACATGTTTAC-GTAAAAATAC 108
consensus_6045#1      CTAAAAGCAGCAAACCCAAAGTCCGAAGGAGAAGTCT-TAC-TGCTGACTGTACAGAGGT 111
consensus_6045#3      TNGCAAATATTNAGTTTATCAT---AGTNCGTTTCGCTTTNCTGANCCAGTTAAGGTAGT 101
consensus_6045#2      TTCTGCTTAACAATACCCTGTTG--AAGACTTTTCCTGGTATTGAGAGA---AGAGTGAT 112
                              *   *        *   *                **        *       

consensus_6045#0      ATCACATCAATTGA-ATATCGTTGATACTGAAAACAACAAGGATTGACACGAACCAGTTT 167
consensus_6045#1      GTGACGGCAGTAAG-GTGTT-----TCCTTCAGACAACCAGCATAACAGCGATGCTGCCT 165
consensus_6045#3      AGGTCATCAG--NG-GTATTG---ATCTNATGAACTATCAAGGGGGATAAAGTATGATCC 155
consensus_6045#2      GCCCTTGTAGTTAACATACT-----TTCTGAGATCGCTCTTGTTTGGCTGGTATTGATTG 167
                              *       *        *        *                         

consensus_6045#0      TTGTACAAAGGCAAAAATTCAGAT-GCTTAGTTGGACTGCAGGACGATTCAGTAACTCCC 226
consensus_6045#1      TC---CACAAGGAAGAGTGGAGTTAGAAAAGATCGACCCTAAAA--ATGCACACCCTGCC 220
consensus_6045#3      AT---------------TTATGACTGATTNGATAGGTGGTGTTA----ATANNCCTTTAC 196
consensus_6045#2      CTGC-CTTTTGTTCCTCCTTTCTTGAATCTTATCCAGTGTACCA----ACAGTGATCCAT 222
                                                      *          *      *         

consensus_6045#0      GGCCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAAGCAAT-CGA 285
consensus_6045#1      TTATCCCACGGATATCCGTCTCCAGCGGTAAGGTCCCAACAA-GTAAGGAGCTAACACGA 279
consensus_6045#3      GGNTATTAATG--AAGGTGCCGCATT--CANNACTTGTAACATCTAGGGATGTCATACAT 252
consensus_6045#2      TCCTTGTGATG---GTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGATACTTTCCAG 279
                                *                                 *   **       *  

consensus_6045#0      GCTATGCTGGCTGGAACAATCGTTCCTCGAGGTC-CTACCATGCCAG-ACAGGTCGGTTG 343
consensus_6045#1      AAGTTACCCACAAGAA-GATCGTGTGT---GACC-AGCCTCAAACAG-TTGGCCCTTTGG 333
consensus_6045#3      TCTTTTCCAGTNCCTG-ACTTATATATAAAGATGGATGCAGTNCCAGGTCGAATTAATTG 311
consensus_6045#2      TTGCTCTCCATAGTAGTTCCCTCTCAACTGAGTACATCATGAAAGGCTTGGAACCTGTTG 339
                          *                                                    * *

consensus_6045#0      AAGAGCGGTAAG--ACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACTGCCG 401
consensus_6045#1      CACTGCCGTCACTCACTCAGGTCACTAAAATTA--GCTCTAACCCAATTTCCTTTCCAGG 391
consensus_6045#3      TTTAGNGGTANT---ATTAANTCGCTTAGGGGT--GTTTAGAGGNTATNGTNCANAA--- 363
consensus_6045#2      CTGATTTATTT----ATTTAAACACATAAATATTGGTACA-AGGTTGCACC--------- 385
                              *       *     *    *       *     *                  

consensus_6045#0      ACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGAT 461
consensus_6045#1      CTTCTCTAGGAG------------------------------------------------ 403
consensus_6045#3      ------------------------------------------------------------
consensus_6045#2      ------------------------------------------------------------
                                                                                  

consensus_6045#0      GCTACC 467
consensus_6045#1      ------
consensus_6045#3      ------
consensus_6045#2      ------