These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1035 fasta sequence [GGTTTTACTCTTGTGATTTGTTGCATGAAACAAATTAATAATTGGCATTCAATTCCTGTAGATCCACAGGATTTCAATTTGTTTTCGACTTTAAATAGTGGTCAAGCTTTCCGCTGGGTTTTTAATTCAACTCTGAATGAATGGCATGGAGTAATAAATGGTCACTTATGGCGATTACGTCAAATGGAGGATTCTAACCCAGTTGAATATTATCTTGAGAAAAATTCGAAAATAAAATTAAACGATGTTCCTTTTGATTTACGTGATTACTTTAGATTGGATATGAATTTGTCTGATCTAGTAAAGGAATGGTCTATAAAGGACAAATGGTTTGAGAATCGTTTCTCTAAAAATTGTCAAATGGATACAGCACGTGGTTTACGCTTATTAAGACTTGCTGCCAACTGGCTTTTGAAAAATGGAGGTCGATCTCGTCTACTTGAACTTCGTTCCGTGTCCCATGTTGAAGCTCAGGCATTTCTGCTTCAAATACCTGNGATCGGAAAGAAGGTTGCAGATTGTATATGTCTTATGTCGTTAGATAAACTAGATGTTGTCCCTATCGATGTCCATATGCATCGTGTTGCACGTGAGAAAGGAATTCCCGAAGCATCCTGTAAAACTATGGCTACAAAATCGTATGATATTATTTCAAAGTCACTTAGTGATTTTTGGGGAAATTATTCTGGATGGGCACAAACGATCCTTTTCTATACTCGTATAATGGAATCGAAACCTAATAAAAAACTTAAGGAACAAATCAGTCGTTTCAGGGTCAACAGTTAATTTACCAAGCTCAAGGAACTTGAAATCGAATGAATGTTGAGTTATCATTCACCACCTCAGTTACTACTAAACATTTTATCTGCAATACATTCAAATTTGGATATTGTTTTAAAATACTTTGTTTTGAAAACTACAATTATAAATACTGGATTGTAACAAAAACAATTATACATGGAAGTGATTCATAATTCTGTAATTCATTATTGGTTGCATAACATGCAAACTTCAAATAGTTTACTAATCATGTTT] [+] EMBL CD078875 [GGTTTTACTCTTGTGATTTGTTGCATGAAACAAATTAATAATTGGCATTCAATTCCTGTAGATCCACAGGATTTCAATTTGTTTTCGACTTTAAATAGTGGTCAAGCTTTCCGCTGGGTTTTTAATTCAACTCTGAATGAATGGCATGGAGTAATAAATGGTCACTTATGGCGATTACGTCAAATGGAGGATTCTAACCCAGTTGAATATTATCTTGAGAAAAATTCGAAAATAAAATTAAACGATGTTCCTTTTGATTTACGTGATTACTTTAGATTGGATATGAATTTGTCTGATCTAGTAAAGGAATGGTCTATAAAGGACAAATGGTTTGAGAATCGTTTCTCTAAAAATTGTCAAATGGATACAGCACGTGGTTTACGCTTATTAAGACTTGCTGCCAACTGGCTTTTGAAAAATGGAGGTCGATCTCGTCTACTTGAACTTCGTTCCGTGTCCCATGTTGAAGCTCAGGCATTTCTGCTTCAAATACCTGNGATCGGAAAGAAGGTTGCAGATTGTATATGTCTTATGTCGTTAGATAAACTAGATGTTGTCCCTATCGATGTCCATATGCATCGTGTTGCACGTGAGAAAGGAATTCCCGA ] [-] EMBL CD073335 [ CTACTTGAACTTCGTTCCGTGTCCCATGTTGAAGCTCAGGCATTTCTGCTTCAAATACCTGGGATCGGAAAGAAGGTTGCAGATTGTATATGTCTTATGTCGTTAGATAAACTAGATGTTGTCCCTATCGATGTCCATATGCATCGTGTTGCACGTGAGAAAGGAATTCCCGAAGCATCCTGTAAAACTATGGCTACAAAATCGTATGATATTATTTCAAAGTCACTTAGTGATTTTTGGGGAAATTATTCTGGATGGGCACAAACGATCCTTTTCTATACTCGTATAATGGAATCGAAACCTAATAAAAAACTTAAGGAACAAATCAGTCGTTTCAGGGTCAACAGTTAATTTACCAAGCTCAAGGAACTTGAAATCGAATGAATGTTGAGTTATCATTCACCACCTCAGTTACTACTAAACATTTTATCTGCAATACATTCAAATTTGGATATTGTTTTAAAATACTTTGTTTTGAAAACTACAATTATAAATACTGGATTGTAACAAAAACAATTATACATGGAAGTGATTCATAATTCTGTAATTCATTATTGGTTGCATAACATGCAAACTTCAAATAGTTTACTAATCATGTTT] consensusID : consensus_6074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 467 fasta sequence [CGAGGCTTGAGAAAAATTCGAAAATAAAATTAACGATGTTCCTTTTGATTTACGTGATTACTTTAGATTGGATATGAATTTGTCTGATCTAGTAAAGGAATGGTCTATAAAGGACAAATGGTTTGAGAATCGTTTCTCTAAAAATTGTCAAATGGATACAGCACGTGGTTTACGCTTATTAAGGCAAGATCCAGAAGAAACATTATTCTCTTTCATTACATCAGCTAATAATAATCTAACAAGAATTACCAAATTACTTTGTAAATTGTGTAGTGAATATGGTAATCCATTGTACTTGGAAAATGGTGATCTAGGGCACTGGACATTCCCATCACTTGAGATACTTGCACAACCTGGTATGCAGGATAATTTGAAAAAAATTGGTTTTGGTTATCGTTCCAAGTTTATTACACTTGCTGCCAACTGGCTTTTGAAAAATGGAGGTCGATCTCGTCTACTTGAACTTC] [+] EMBL CD084098 [CGAGGCTTGAGAAAAATTCGAAAATAAAATTAACGATGTTCCTTTTGATTTACGTGATTACTTTAGATTGGATATGAATTTGTCTGATCTAGTAAAGGAATGGTCTATAAAGGACAAATGGTTTGAGAATCGTTTCTCTAAAAATTGTCAAATGGATACAGCACGTGGTTTACGCTTATTAAGGCAAGATCCAGAAGAAACATTATTCTCTTTCATTACATCAGCTAATAATAATCTAACAAGAATTACCAAATTACTTTGTAAATTGTGTAGTGAATATGGTAATCCATTGTACTTGGAAAATGGTGATCTAGGGCACTGGACATTCCCATCACTTGAGATACTTGCACAACCTGGTATGCAGGATAATTTGAAAAAAATTGGTTTTGGTTATCGTTCCAAGTTTATTACACTTGCTGCCAACTGGCTTTTGAAAA ] [-] EMBL CD063205 [ AAGAAACATTATTCTCTTTCATTACATCAGCTAATAATAATCTAACAAGAATTACCAAATTACTTTGTAAATTGTGTAGTGAATATGGTAATCCATTGTACTTGGAAAATGGTGATCTAGGGCACTGGACATTCCCATCACTTGAGATACTTGCACAACCTGGTATGCAGGATAATTTGAAAAAAATTGGTTTTGGTTATCGTTCCAAGTTTATTACACTTGCTGCCAACTGGCTTTTGAAAAATGGAGGTCGATCTCGTCTACTTGAACTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6074#0 GGTTTTACTCTTGTGATTTGTTGCATGAAACAAATTAATAATTGGCATTCAATTCCTGTA 60 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 GATCCACAGGATTTCAATTTGTTTTCGACTTTAAATAGTGGTCAAGCTTTCCGCTGGGTT 120 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 TTTAATTCAACTCTGAATGAATGGCATGGAGTAATAAATGGTCACTTATGGCGATTACGT 180 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 CAAATGGAGGATTCTAACCCAGTTGAATATTATCTTGAGAAAAATTCGAAAATAAAATTA 240 consensus_6074#1 ----------------------------CGAGGCTTGAGAAAAATTCGAAAATAAAATTA 32 *************************** consensus_6074#0 AACGATGTTCCTTTTGATTTACGTGATTACTTTAGATTGGATATGAATTTGTCTGATCTA 300 consensus_6074#1 A-CGATGTTCCTTTTGATTTACGTGATTACTTTAGATTGGATATGAATTTGTCTGATCTA 91 * ********************************************************** consensus_6074#0 GTAAAGGAATGGTCTATAAAGGACAAATGGTTTGAGAATCGTTTCTCTAAAAATTGTCAA 360 consensus_6074#1 GTAAAGGAATGGTCTATAAAGGACAAATGGTTTGAGAATCGTTTCTCTAAAAATTGTCAA 151 ************************************************************ consensus_6074#0 ATGGATACAGCACGTGGTTTACGCTTATTAAGACTTGCTGCCAACTGGCTTTTGAAAAAT 420 consensus_6074#1 ATGGATACAGCACGTGGTTTACGCTTATTAAGGCAAGATCC--------------AGAAG 197 ******************************** * * * * * ** consensus_6074#0 GGAGGTCGATCTCGTCTACTTGAACTTCGTTCCGTGTCCCATGTTGAAGCTCAGGCATTT 480 consensus_6074#1 AAACATTATTCTCTTTCATTACA--TCAGCTAATAATAATCTAACAAGAATTACCAAATT 255 * * **** * * * * * * * * * * * * * ** consensus_6074#0 CTGCTTCAAATACCTGNGATCGGAAAGAAGGTTGCAGATTGTATATGTCTTATGTCGTTA 540 consensus_6074#1 ACTTTGTAAAT---TGTG-TAGTGAATATGGTAATCCATTGTACTTGGAAAATGGTGATC 311 * **** ** * * * ** * *** ****** ** *** * * consensus_6074#0 GATAA-ACTAGATGTTGTCCCTA-TCGATGTCCATATGCATCGTGTTGCACGTGAGAAAG 598 consensus_6074#1 TAGGGCACTGGACATTCCCATCACTTGAGATACTTGCACAACCTGGTATGC-----AGGA 366 * *** ** ** * * * ** * * * ** * ** * * * consensus_6074#0 GAATTCCCGAAGCATCCTGTAAAACTATGGCTACAAAATCGTATGATATTATTTCAAAGT 658 consensus_6074#1 TAATTTGAAAAAAATTGGTTTTGGTTATCGTTCCAAGTT--TATTACACTT-------GC 417 **** ** ** * *** * * *** * *** * * * * consensus_6074#0 CACTTAGTGATTTTTGGGGAAATTATTCTGGATGGGCACAAACGATCCTTTTCTATACTC 718 consensus_6074#1 TGCCAACTGGCTTTTGAAAAATGGAGGTCGATCTCGTCTACTTGAACTTC---------- 467 * * ** ***** ** * * * * ** * * consensus_6074#0 GTATAATGGAATCGAAACCTAATAAAAAACTTAAGGAACAAATCAGTCGTTTCAGGGTCA 778 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 ACAGTTAATTTACCAAGCTCAAGGAACTTGAAATCGAATGAATGTTGAGTTATCATTCAC 838 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 CACCTCAGTTACTACTAAACATTTTATCTGCAATACATTCAAATTTGGATATTGTTTTAA 898 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 AATACTTTGTTTTGAAAACTACAATTATAAATACTGGATTGTAACAAAAACAATTATACA 958 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 TGGAAGTGATTCATAATTCTGTAATTCATTATTGGTTGCATAACATGCAAACTTCAAATA 1018 consensus_6074#1 ------------------------------------------------------------ consensus_6074#0 GTTTACTAATCATGTTT 1035 consensus_6074#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||