These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 419 fasta sequence [GTGGCCGATGGGGACGTTGGTCGCAGGTCAGATATCGGGGGTCGTTCACTGCAACTGTGCGCAGACCAAAACCTGTTTCTGGCTGGCACTAACTTCCGGCATATTCATCGCCAATATGCCACCTGGCGTCCTCCCTCTACATCTCAAGCCTGAACTCAGATTGATCACATCTCGGTCACCTACCGCTGGCGCGGTTGTGTACAAGACTGCCACTCCTTTCGGAGCACCTATTCGGACGTTGATCATGCCCTTGTTTGCACCAATCTTACCTTACTTTTCAGTGGCCAACGAATTCATCGTCCTAAACGGATTGATTTCAGTAAATTGATTGCAGCTTCTGTTGCGACTAAGTATCANACCGAGCTATGTTTTAGGCTAGCTACCATCCCACCATAAAGTATAGATGAGCATTGNGTGCA] [+] EMBL AI976071 [GTGGCCGATGGGGACGTTGGTCGCAGGTCAGATATCGGGGGTCGTTCACTGCAACTGTGCGCAGACCAAAACCTGTTTCTGGCTGGCACTAACTTCCGGCATATTCATCGCCAATATGCCACCTGGCGTCCTCCCTCTACATCTCAAGCCTGAACTCAGATTGATCACATCTCGGTCACCTACCGCTGGCGCGGTTGTGTACAAGACTGCCACTCCTTTCGGAGCACCTATTCGGACGTTGATCATGCCCTTGTTTGCACCAATCTTACCTTACTTTTCAGTGGCCAACGAATTCATCGTCCTAAACGGATTGATTTCAGTAAATTGATTGCAGCTTCTGTTGCGACTAAGTATCANACCGAGCTATGTTTTAGGCTAGCTACCATCCCACCATAAAGTATAGATGAGCATTGNGTGCA] [+] EMBL AI975940 [GTGGCCGATGGGGACGTTGGTCGCAGGTCAAATATCGGGGGTCGTTCACTGCAACTGAGCGCAGACCAAAACCTGTTTCTGGCTGGC ] consensusID : consensus_6079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [TCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACTACAAACTGTTTCTGGCCAGCACTAACTTCCGGCACAGTCATCGCCGGTGTGCCACTTGGCGTCCTCCCTCTGCATCCCAAGCCTAGACATCGAGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGTACCTATCTGGAGTCTGATCATGCCCTGGTCTGCGCCAATCTCACCTTACTTTTCAGTGGCCGAAGGATAGAC] [-] EMBL BG931922 [TCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACTACAAACTGTTTCTGGCCAGCACTAACTTCCGGCACAGTCATCGCCGGTGTGCCACTTGGCGTCCTCCCTCTGCATCCCAAGCCTAGACATCGAGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGTACCTATCTGGAGTCTGATCATGCCCTGGTCTGCGCCAATCTCACCTTACTTTTCAGTGGCCGAAGGATAGAC] consensusID : consensus_6079#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [ATCGTTGGTCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACCACAACCTGTTTCTGGCTAGCACTAACTTCCGGCACAGTCATCGCCAGTGTGCCACCTGGCGTCCTCCCTCTGCATCTCAAGCCTGGACTCAGATTGATCACATCGCGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGA] [+] EMBL BG931155 [ATCGTTGGTCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACCACAACCTGTTTCTGGCTAGCACTAACTTCCGGCACAGTCATCGCCAGTGTGCCACCTGGCGTCCTCCCTCTGCATCTCAAGCCTGGACTCAGATTGATCACATCGCGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6079#0 GTGGCCGATGGGGACGTTGGTCGCAGGTCAGATATCGGGGGTCGTTCACTGCAACTGTGC 60 consensus_6079#2 ------------ATCGTTGGTCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGC 48 consensus_6079#1 --------------------TCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGC 40 ******* ****** ***** **** ************ consensus_6079#0 GCAGACCAAAACCTGTTTCTGGCTGGCACTAACTTCCGGCATATTCATCGCCAATATGCC 120 consensus_6079#2 ACAGACCACAACCTGTTTCTGGCTAGCACTAACTTCCGGCACAGTCATCGCCAGTGTGCC 108 consensus_6079#1 ACAGACTACAAACTGTTTCTGGCCAGCACTAACTTCCGGCACAGTCATCGCCGGTGTGCC 100 ***** * ** *********** **************** * ******** * **** consensus_6079#0 ACCTGGCGTCCTCCCTCTACATCTCAAGCCTGAACTCAGATTGATCACATCTCGGTCACC 180 consensus_6079#2 ACCTGGCGTCCTCCCTCTGCATCTCAAGCCTGGACTCAGATTGATCACATCGCGATCAGC 168 consensus_6079#1 ACTTGGCGTCCTCCCTCTGCATCCCAAGCCTAGAC-------------ATCGAGATCAGC 147 ** *************** **** ******* ** *** * *** * consensus_6079#0 TACCGCTGGCGCGGTTGTGTACAAGACTGCCACTCCTTTCGGAGCACCTATTCGGACGTT 240 consensus_6079#2 TACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGA--------------- 213 consensus_6079#1 TACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGTACCTATCTGGAGTCT 207 *********** ******************* ******* **** consensus_6079#0 GATCATGCCCTTGTTTGCACCAATCTTACCTTACTTTTCAGTGGCCAACGAATTCATCGT 300 consensus_6079#2 ------------------------------------------------------------ consensus_6079#1 GATCATGCCCTGGTCTGCGCCAATCTCACCTTACTTTTCAGTGGCCGAAGGATAGAC--- 264 consensus_6079#0 CCTAAACGGATTGATTTCAGTAAATTGATTGCAGCTTCTGTTGCGACTAAGTATCANACC 360 consensus_6079#2 ------------------------------------------------------------ consensus_6079#1 ------------------------------------------------------------ consensus_6079#0 GAGCTATGTTTTAGGCTAGCTACCATCCCACCATAAAGTATAGATGAGCATTGNGTGCA 419 consensus_6079#2 ----------------------------------------------------------- consensus_6079#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||