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Schistosoma mansoni
cluster # 6086 cluster # 6086       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6086#0 length = 845 sequences # 3  
consensus_6086#1 length = 660 sequences # 1  

consensusID : consensus_6086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 845
fasta sequence
                              [AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAATCTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGATAATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAATCGACTGTTGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGATACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAACCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGTGAAACAACTGAAAAAGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGAC-AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGCCAT]

[+] EMBL CD154115             [AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAATCTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGATAATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAATCGACTGTTGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGATACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAACCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGTGAAACAACTGAAAAAGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGACAAACCAATAC ATTACCANATGA                                                                                                                                                                                                                                       ]
[-] EMBL CD115467             [                                                                                                                                                                                                                                                                                                                                   TCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGGGAAACAACTGAAAAAGAAATATCCACCTTATTAGTTGAGCGCAAAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGAC AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGCCAT]
[+] EMBL CD130750             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATGCACTCGTTGGTAGACGTTCACAAGCTACTATTGAATTAAGTAGAC AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATTTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTA                                                                 ]


>consensus_6086#0 AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAAT CTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGAT AATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAATCGACTGTT GTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGAT ACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAAC CACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAA GTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAA CGATTAGATGATTTGATGTTAAATTACAAATCTTATCGTGAAACAACTGAAAAAGAAATA TCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACAT TATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGACAACCAATA CAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGAAGAAAAC CTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACT CACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTA CGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGT GCCAT



consensusID : consensus_6086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence
                              [GACGAAACGACTGCTCAATGGTCTTAGTTTCTTAATGTTTGTTTAACTGAGGCATTTTTTGATCTCAATAGAATTCAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAAAGTACTATGATCAATACAATTTGATCATTTGAATTAATGCTAATATACATCACTGGAAAATTTATTTATATACATTTAAATGTACACATATTGTCAGTGTCTTTCATTTTCACAATAAAGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGATAATGAAACTGTTCTAAGACAGANATGTGAAGATGAATTANAAATTTCCAAATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGCTCAGAAAAGATTATTGATCTGCAAGATCAAGTTATTCGGTTGCAAAATGATTTAGACAATGTGGAATCGGGTCAAGCTGATTTTTGTCGTTTGTCACAAAATTTACAAGTTCAACTGGGAAGATTANG]

[+] EMBL CD130722             [GACGAAACGACTGCTCAATGGTCTTAGTTTCTTAATGTTTGTTTAACTGAGGCATTTTTTGATCTCAATAGAATTCAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAAAGTACTATGATCAATACAATTTGATCATTTGAATTAATGCTAATATACATCACTGGAAAATTTATTTATATACATTTAAATGTACACATATTGTCAGTGTCTTTCATTTTCACAATAAAGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGATAATGAAACTGTTCTAAGACAGANATGTGAAGATGAATTANAAATTTCCAAATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGCTCAGAAAAGATTATTGATCTGCAAGATCAAGTTATTCGGTTGCAAAATGATTTAGACAATGTGGAATCGGGTCAAGCTGATTTTTGTCGTTTGTCACAAAATTTACAAGTTCAACTGGGAAGATTANG]


>consensus_6086#1 GACGAAACGACTGCTCAATGGTCTTAGTTTCTTAATGTTTGTTTAACTGAGGCATTTTTT GATCTCAATAGAATTCAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTG TTTCAATTAAAGTACTATGATCAATACAATTTGATCATTTGAATTAATGCTAATATACAT CACTGGAAAATTTATTTATATACATTTAAATGTACACATATTGTCAGTGTCTTTCATTTT CACAATAAAGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTC ACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTAC GAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTG ATAATGAAACTGTTCTAAGACAGANATGTGAAGATGAATTANAAATTTCCAAATCTAAGT TGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGCTCAGAAAA GATTATTGATCTGCAAGATCAAGTTATTCGGTTGCAAAATGATTTAGACAATGTGGAATC GGGTCAAGCTGATTTTTGTCGTTTGTCACAAAATTTACAAGTTCAACTGGGAAGATTANG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6086#0      AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAAT 60
consensus_6086#1      ---------------------------GACGAAACGACTGCT--CAATGGTCTTAGTTTC 31
                                                  * *       ****     *  **  ***   

consensus_6086#0      CTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGAT 120
consensus_6086#1      TTAAT-----GTTTGTTTAACTGAG----------GCATTTTTTG-----ATCTCAATAG 71
                       ****     * *  * * **  *           ***** * **     *** *   * 

consensus_6086#0      AATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAAT-CGACTGT 179
consensus_6086#1      AATT-CAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAA 130
                      ****  ****         ** *  **  **** *  *    ***  *   * * * *  

consensus_6086#0      TGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGA 239
consensus_6086#1      AGTACTATGATCAATACAATTTGAT----CATTTGAATTAATGCTAATATACATCACTGG 186
                       **   *  *******     * **    *** *     *  ** *** *** * ** * 

consensus_6086#0      TACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAA 299
consensus_6086#1      AAAATTTATTTATATACATTTAAATGTACACATA-TTGTCAGTGTCTTTCATTTTCACAA 245
                       * * * *   ** ****     *  *  *** * **   * **  **  ****  * **

consensus_6086#0      CCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCA 359
consensus_6086#1      TAAAG---TGAAGCACGTGATCATTTAG-AGGAATGCTTAAAGAAGGAGACTGAAACTCA 301
                        * *   ****    *  *  * *    **  *   **  * **      * *******

consensus_6086#0      AGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCA 419
consensus_6086#1      CAG---AGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCT 358
                             *****   * * **   * *  **    ***  * ** * *   **    ** 

consensus_6086#0      ACGA---TTAGATGA--TTTGATGTTAAATTACAAATCTTATCG-TGAAACAACTGAAAA 473
consensus_6086#1      ACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACG 418
                      ****   ** ** **     *  *     ** *  ** ** **  *   *********  

consensus_6086#0      AGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCG 533
consensus_6086#1      TGATA-----ATGAAACTGTTCTAAGACAGANATGTGAAGATGAAT-TANAAATTTCCAA 472
                       ** *     *    * *  *  *   ** *  **  *     *** ** *****     

consensus_6086#0      TTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGACA 593
consensus_6086#1      ATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGC 532
                       **  * *   *** ***    * ** *  *  ** * ***  * * * **** *  *  

consensus_6086#0      ACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGA 653
consensus_6086#1      TCAGAAAAGATTATTGATCTGCAAGATCAAGTTA-----TTCGGTTGCAAAATGATTT-- 585
                       *  * *  ****   *     **     * ***     *  **    ***** ** *  

consensus_6086#0      AGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGAC 713
consensus_6086#1      AGACAATGTGGAATCGGGTCAAGC---TGATTTTTGTCGTTTGTCACAAAATTTACAAGT 642
                      *** **  *   **   ** ****   ****  **        *    ***     *   

consensus_6086#0      TGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTC 773
consensus_6086#1      TCAACTGGGAAGATTANG------------------------------------------ 660
                      * **      *** **                                            

consensus_6086#0      AATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAAC 833
consensus_6086#1      ------------------------------------------------------------
                                                                                  

consensus_6086#0      TGAACGTGCCAT 845
consensus_6086#1      ------------
                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)