These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [GGTTTAAGAATTAGGGTCATGGAAACGATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTAAAATCAAGGGGTGAATTAATTTTGAGCGACAATTCAGGACCTGTTATCTTAAATCTGATCTGGTCATCCATAAAATATAGTATTGCGAAGAAATTCGATACTTGATACACGATCGCTTTTTTATTGGAAATATATAAGTAAAAGCATTGAGTGTAGCCCATATGGGGGTTGAATAACTGTCAAAATGCAATGTGCATATTTATATA] [+] EMBL CD157755 [GGTTTAAGAATTAGGGTCATGGAAACGATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTAAAATCAAGGGGTGAATTAATTTTGAGCGACAATTCAGGACCTGTTATCTTAAATCTGATCTGGTCATCCATAAAATATAGTATTGCGAAGAAATTCGATACTTGATACACGATCGCTTTTTTATTGGAAATATATAAGTAAAAGCATTGAGTGTAGCCCATATGGGGGTTGAATAACTGTCAAAATGCAATGTGCATATTTATATA] consensusID : consensus_609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TTGAATAGTAAGGAATATGATTTACAATCGATGGTCAGGTTTAAGAATTAGGTTTATGGTTTGTATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTTAAATCAATGGGTGAATTAATTTTGAGCGAAAATTCAGGACCTGTTATCTTAAATCTGATCTGTTCATCCATAAAATATAGTCTTGCCAAGAAATTCGATACTTGATACACGATCGTTTTT] [+] EMBL CD157686 [TTGAATAGTAAGGAATATGATTTACAATCGATGGTCAGGTTTAAGAATTAGGTTTATGGTTTGTATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTTAAATCAATGGGTGAATTAATTTTGAGCGAAAATTCAGGACCTGTTATCTTAAATCTGATCTGTTCATCCATAAAATATAGTCTTGCCAAGAAATTCGATACTTGATACACGATCGTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_609#0 -------------------------------------GGTTTAAGAATTAGGGTCATGGA 23 consensus_609#1 TTGAATAGTAAGGAATATGATTTACAATCGATGGTCAGGTTTAAGAATTAGGTTTATGGT 60 *************** * **** consensus_609#0 AACGATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTAAAATCAAGGGGTGAAT 83 consensus_609#1 TTGTATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTTAAATCAATGGGTGAAT 120 *************************************** ******* ******** consensus_609#0 TAATTTTGAGCGACAATTCAGGACCTGTTATCTTAAATCTGATCTGGTCATCCATAAAAT 143 consensus_609#1 TAATTTTGAGCGAAAATTCAGGACCTGTTATCTTAAATCTGATCTGTTCATCCATAAAAT 180 ************* ******************************** ************* consensus_609#0 ATAGTATTGCGAAGAAATTCGATACTTGATACACGATCGCTTTTTTATTGGAAATATATA 203 consensus_609#1 ATAGTCTTGCCAAGAAATTCGATACTTGATACACGATCGTTTTT---------------- 224 ***** **** **************************** **** consensus_609#0 AGTAAAAGCATTGAGTGTAGCCCATATGGGGGTTGAATAACTGTCAAAATGCAATGTGCA 263 consensus_609#1 ------------------------------------------------------------ consensus_609#0 TATTTATATA 273 consensus_609#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||